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List of works by Tomasz Zok

Application Scenarios Using Serpens Suite for Kepler Scientific Workflow System

Building the library of RNA 3D nucleotide conformations using the clustering approach

Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia

scientific article published on 27 June 2022

Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models

scientific article published on 25 August 2022

DrawTetrado to create layer diagrams of G4 structures

scientific article published on 2 August 2022

ElTetrado: a tool for identification and classification of tetrads and quadruplexes

scientific article published on 31 January 2020

Entanglements of structure elements revealed in RNA 3D models

scientific article published on 27 September 2021

LCS-TA to identify similar fragments in RNA 3D structures

scientific article

MCQ4Structures to compute similarity of molecule structures

scientific article published on 11 April 2013

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.

scientific article published on 11 December 2017

New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure

scientific article published on 14 October 2016

New in silico approach to assessing RNA secondary structures with non-canonical base pairs

scientific article published on 2 September 2015

ONQUADRO: a database of experimentally determined quadruplex structures

scientific article published on 7 January 2022

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

scientific article published on 16 April 2015

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

scientific article

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

scientific article published on 05 May 2020

RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools

scientific article published on 01 January 2020

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures

scholarly article by Maciej Antczak published in August 2018

RNAloops: a database of RNA multiloops

scientific article published on 2 September 2022

RNApdbee 2.0: multifunctional tool for RNA structure annotation.

scientific article published in July 2018

RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs

scientific article

RNAspider: a webserver to analyze entanglements in RNA 3D structures

scientific article published on 29 March 2022

RNAthor - fast, accurate normalization, visualization and statistical analysis of RNA probing data resolved by capillary electrophoresis

scientific article published on 01 October 2020

RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs

scientific article published on 01 January 2019

Topology-based classification of tetrads and quadruplex structures

scientific article published on 01 February 2020

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