List of works - Mark J P Chaisson

A draft human pangenome reference

scientific article published on 10 May 2023

A robust benchmark for detection of germline large deletions and insertions

scientific article published on 15 June 2020

An integrated map of structural variation in 2,504 human genomes

scientific article

Assembly of long error-prone reads using de Bruijn graphs

scientific article published on 12 December 2016

Author Correction: A robust benchmark for detection of germline large deletions and insertions

scientific article published on 22 July 2020

Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data

scientific article published in January 2018

De novo fragment assembly with short mate-paired reads: Does the read length matter?

scientific article published on 3 December 2008

Deleterious mitochondrial DNA point mutations are overrepresented in Drosophila expressing a proofreading-defective DNA polymerase γ

scientific article published on 19 November 2018

Discovery and genotyping of structural variation from long-read haploid genome sequence data.

scientific article

Extensive sequencing of seven human genomes to characterize benchmark reference materials

scientific article

Fragment assembly with short reads

scientific article

Genetic variation and the de novo assembly of human genomes

scientific article

High-resolution comparative analysis of great ape genomes

scientific article published in Science

Human-specific tandem repeat expansion and differential gene expression during primate evolution

scientific article published on 28 October 2019

HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies

scientific article published on 19 January 2017

Long-read sequence and assembly of segmental duplications

scientific article published on 17 December 2018

Long-read sequence assembly of the gorilla genome

scientific article published on April 2016

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory ⬇️

scientific article published on September 19, 2012

Multi-platform discovery of haplotype-resolved structural variation in human genomes

scientific article published on 16 April 2019

Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers ⬇️

scientific article published on October 14, 2011

Reconstructing complex regions of genomes using long-read sequencing technology

scientific article published on 13 January 2014

Resolving multicopy duplications de novo using polyploid phasing

scientific article published on 12 April 2017

Resolving the complexity of the human genome using single-molecule sequencing

scientific article

STAR: ultrafast universal RNA-seq aligner

scientific article (publication date: 2013)

Short read fragment assembly of bacterial genomes

scientific article published on 14 December 2007

List of works by Mark J P Chaisson

A draft human pangenome reference

A robust benchmark for detection of germline large deletions and insertions

An integrated map of structural variation in 2,504 human genomes

Assembly of long error-prone reads using de Bruijn graphs

Author Correction: A robust benchmark for detection of germline large deletions and insertions

Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data

De novo fragment assembly with short mate-paired reads: Does the read length matter?

Deleterious mitochondrial DNA point mutations are overrepresented in Drosophila expressing a proofreading-defective DNA polymerase γ

Discovery and genotyping of structural variation from long-read haploid genome sequence data.

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Fragment assembly with short reads

Genetic variation and the de novo assembly of human genomes

High-resolution comparative analysis of great ape genomes

Human-specific tandem repeat expansion and differential gene expression during primate evolution

HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies

Long-read sequence and assembly of segmental duplications

Long-read sequence assembly of the gorilla genome

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory ⬇️

Multi-platform discovery of haplotype-resolved structural variation in human genomes

Multi-platform discovery of haplotype-resolved structural variation in human genomes

Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers ⬇️

Reconstructing complex regions of genomes using long-read sequencing technology

Resolving multicopy duplications de novo using polyploid phasing

Resolving the complexity of the human genome using single-molecule sequencing

STAR: ultrafast universal RNA-seq aligner

Short read fragment assembly of bacterial genomes