List of works - J Neel Scarsdale

3D interaction homology: The hydropathic interaction environments of even alanine are diverse and provide novel structural insight

scientific article published on 18 May 2019

3d interaction homology: The structurally known rotamers of tyrosine derive from a surprisingly limited set of information-rich hydropathic interaction environments described by maps.

scientific article

Alkyl-CoA disulfides as inhibitors and mechanistic probes for FabH enzymes

scientific article

An intrinsically disordered region of methyl-CpG binding domain protein 2 (MBD2) recruits the histone deacetylase core of the NuRD complex

scientific article published on 9 March 2015

Applying an Empirical Hydropathic Forcefield in Refinement May Improve Low-Resolution Protein X-Ray Crystal Structures ⬇️

scientific article published on January 5, 2011

Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design

scientific article

Biosynthetic origin of hygromycin A.

scientific article

Bound water at protein-protein interfaces: partners, roles and hydrophobic bubbles as a conserved motif

scientific article (publication date: 2011)

Comparison of structural effects in 1,4 DNA-DNA interstrand cross-links formed by dinuclear and trinuclear platinum complexes

scientific article

Control of Substrate Specificity by a Single Active Site Residue of the KsgA Methyltransferase ⬇️

scientific article published on December 22, 2011

Cooperative effects in long-range 1,4 DNA-DNA interstrand cross-links formed by polynuclear platinum complexes: an unexpected syn orientation of adenine bases outside the binding sites

scientific article

Crystal structure of KsgA, a universally conserved rRNA adenine dimethyltransferase in Escherichia coli

scientific article

Crystal structure of a substrate complex of Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthase III (FabH) with lauroyl-coenzyme A

scientific journal article

Crystal structure of the PdxY Protein from Escherichia coli.

scientific article published on December 2004

Crystal structures of U8 snoRNA decapping nudix hydrolase, X29, and its metal and cap complexes

scientific article

Crystal structures of r(GGUCACAGCCC)2

scientific article (publication date: March 2003)

Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons

scientific article

Crystallization and preliminary X-ray diffraction analysis of KsgA, a universally conserved RNA adenine dimethyltransferase in Escherichia coli

scientific article

Crystals of X29, a Xenopus laevis U8 snoRNA-binding protein with nuclear decapping activity

Hydropathic analysis and comparison of KcsA and Shaker potassium channels

scientific article published in November 2007

Hydropathic analysis of the free energy differences in anthracycline antibiotic binding to DNA

scientific article

Interaction of Thrombin with Sucrose Octasulfate

scientific article

Location of the pteroylpolyglutamate-binding site on rabbit cytosolic serine hydroxymethyltransferase

scientific article

Nitrosative stress sensing in Porphyromonas gingivalis: structure of and heme binding by the transcriptional regulator HcpR

scientific article published on 05 April 2019

Probing reactivity and substrate specificity of both subunits of the dimeric Mycobacterium tuberculosis FabH using alkyl-CoA disulfide inhibitors and acyl-CoA substrates

scientific article

Probing the dynamic distribution of bound states for methylcytosine-binding domains on DNA

scientific article

Separate entrance and exit portals for ligand traffic in Mycobacterium tuberculosis FabH

scientific article

Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence ⬇️

scientific article published on April 29, 2011

Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches

scientific article

Structural and Functional Divergence within the Dim1/KsgA Family of rRNA Methyltransferases

scientific article

Structure-based mechanism for early PLP-mediated steps of rabbit cytosolic serine hydroxymethyltransferase reaction

scientific article published on 15 July 2013

Targeting retroviral Zn finger-DNA interactions: a small-molecule approach using the electrophilic nature of trans-platinum-nucleobase compounds

scientific article

Unintended consequences? Water molecules at biological and crystallographic protein-protein interfaces

scientific article

WITHDRAWN: The chromatin remodeling complex NURF localizes to gene bodies and is required for mRNA processing

retracted scientific article published on 23 August 2018

Web application for studying the free energy of binding and protonation states of protein-ligand complexes based on HINT.

scientific article published on 25 June 2009

p66 -MBD2 coiled-coil interaction and recruitment of Mi-2 are critical for globin gene silencing by the MBD2-NuRD complex

scientific article

List of works by J Neel Scarsdale

3D interaction homology: The hydropathic interaction environments of even alanine are diverse and provide novel structural insight

3d interaction homology: The structurally known rotamers of tyrosine derive from a surprisingly limited set of information-rich hydropathic interaction environments described by maps.

Alkyl-CoA disulfides as inhibitors and mechanistic probes for FabH enzymes

An intrinsically disordered region of methyl-CpG binding domain protein 2 (MBD2) recruits the histone deacetylase core of the NuRD complex

Applying an Empirical Hydropathic Forcefield in Refinement May Improve Low-Resolution Protein X-Ray Crystal Structures ⬇️

Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design

Biosynthetic origin of hygromycin A.

Bound water at protein-protein interfaces: partners, roles and hydrophobic bubbles as a conserved motif

Comparison of structural effects in 1,4 DNA-DNA interstrand cross-links formed by dinuclear and trinuclear platinum complexes

Control of Substrate Specificity by a Single Active Site Residue of the KsgA Methyltransferase ⬇️

Cooperative effects in long-range 1,4 DNA-DNA interstrand cross-links formed by polynuclear platinum complexes: an unexpected syn orientation of adenine bases outside the binding sites

Crystal structure of KsgA, a universally conserved rRNA adenine dimethyltransferase in Escherichia coli

Crystal structure of a substrate complex of Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthase III (FabH) with lauroyl-coenzyme A

Crystal structure of the PdxY Protein from Escherichia coli.

Crystal structures of U8 snoRNA decapping nudix hydrolase, X29, and its metal and cap complexes

Crystal structures of r(GGUCACAGCCC)2

Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons

Crystallization and preliminary X-ray diffraction analysis of KsgA, a universally conserved RNA adenine dimethyltransferase in Escherichia coli

Crystals of X29, a Xenopus laevis U8 snoRNA-binding protein with nuclear decapping activity

Hydropathic analysis and comparison of KcsA and Shaker potassium channels

Hydropathic analysis of the free energy differences in anthracycline antibiotic binding to DNA

Interaction of Thrombin with Sucrose Octasulfate

Location of the pteroylpolyglutamate-binding site on rabbit cytosolic serine hydroxymethyltransferase

Nitrosative stress sensing in Porphyromonas gingivalis: structure of and heme binding by the transcriptional regulator HcpR

Probing reactivity and substrate specificity of both subunits of the dimeric Mycobacterium tuberculosis FabH using alkyl-CoA disulfide inhibitors and acyl-CoA substrates

Probing the dynamic distribution of bound states for methylcytosine-binding domains on DNA

Separate entrance and exit portals for ligand traffic in Mycobacterium tuberculosis FabH

Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence ⬇️

Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches

Structural and Functional Divergence within the Dim1/KsgA Family of rRNA Methyltransferases

Structure-based mechanism for early PLP-mediated steps of rabbit cytosolic serine hydroxymethyltransferase reaction

Targeting retroviral Zn finger-DNA interactions: a small-molecule approach using the electrophilic nature of trans-platinum-nucleobase compounds

Unintended consequences? Water molecules at biological and crystallographic protein-protein interfaces

WITHDRAWN: The chromatin remodeling complex NURF localizes to gene bodies and is required for mRNA processing

Web application for studying the free energy of binding and protonation states of protein-ligand complexes based on HINT.

p66 -MBD2 coiled-coil interaction and recruitment of Mi-2 are critical for globin gene silencing by the MBD2-NuRD complex