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List of works by Katie J.M. Jeffery

A Candida auris Outbreak and Its Control in an Intensive Care Setting

article

Antibody Status and Incidence of SARS-CoV-2 Infection in Health Care Workers

scientific article published on 23 December 2020

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study

scientific article

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

scientific article published on 21 August 2020

Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients

scientific article published on 18 June 2020

HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort and dynamic model

HLA contributes to immune control of hepatitis B in HIV-positive African adults

article

Increasing burden of community-acquired pneumonia leading to hospitalisation, 1998-2014

scientific article

Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples

scientific article published on 23 December 2019

Metagenomic Nanopore sequencing of influenza virus direct from clinical respiratory samples

scientific article published on 19 June 2019

Multilocus sequence typing of Clostridium difficile

scientific article

Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission

scientific article published on 23 April 2020

Nanopore metagenomic sequencing to investigate nosocomial transmission of human metapneumovirus from a unique genetic group among haematology patients in the United Kingdom

scientific article published on 22 February 2020

Optimized use of Oxford Nanopore flowcells for hybrid assemblies

scientific article published on 11 November 2020

Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli

scientific article published on 23 March 2020

Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli : Supplementary Materials

scholarly article published 7 January 2019

SARS-CoV-2 antibody prevalence, titres and neutralising activity in an antenatal cohort, United Kingdom, 14 April to 15 June 2020

scientific article published on 01 October 2020

Screening, characterisation and prevention of Hepatitis B virus (HBV) co-infection in HIV-positive children in South Africa

scientific article published on 31 October 2016

Ten years of population-level genomic Escherichia coli and Klebsiella pneumoniae serotype surveillance informs vaccine development for invasive infections

scientific article published on 07 January 2021

Ten-year longitudinal molecular epidemiology study of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire, UK

scientific article published on 03 September 2021

The duration, dynamics and determinants of SARS-CoV-2 antibody responses in individual healthcare workers

scientific article published on 06 January 2021

Trends over time in Escherichia coli bloodstream infections, urinary tract infections, and antibiotic susceptibilities in Oxfordshire, UK, 1998-2016: a study of electronic health records

scientific article published on 17 August 2018

Whole genome sequencing for predicting clarithromycin resistance in

scientific article published on 21 December 2018

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