List of works by Chinnappa D Kodira

A catalog of reference genomes from the human microbiome

scientific article

A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome

scientific article

Analysis of high-throughput sequencing and annotation strategies for phage genomes

scientific article

Analysis of the DNA sequence and duplication history of human chromosome 15

scientific article

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation

scientific article

Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity

scientific article published on 19 June 2014

Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development

scientific article

Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives

scientific article

Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis

scientific article

Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies

scientific article

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence

scientific article published on January 2013

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

scientific article

Computational de novo discovery of distinguishing genes for biological processes and cell types in complex tissues.

scientific article published in March 2018

DNA sequence and analysis of human chromosome 18

scientific article

DNA sequence and analysis of human chromosome 8

scientific article

Directed sequencing and annotation of three Dicentrarchus labrax L. chromosomes by applying Sanger- and pyrosequencing technologies on pooled DNA of comparatively mapped BAC clones.

scientific article published on 14 June 2011

Dynamics of Pseudomonas aeruginosa genome evolution

scientific article

Erratum: Corrigendum: DNA sequence and analysis of human chromosome 18

scientific article published in Nature

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

scientific article

Evolutionary dynamics of the accessory genome of Listeria monocytogenes

scientific article

Genome Sequence of Ophidiomyces ophiodiicola, an Emerging Fungal Pathogen of Snakes

scientific article published on 27 July 2017

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

scientific article

Genome sequence of Aedes aegypti, a major arbovirus vector

scientific article

Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.).

scientific article

Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication

scientific article

Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides

scientific article

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

scientific article

Leveraging Spatial Variation in Tumor Purity for Improved Somatic Variant Calling of Archival Tumor Only Samples

Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatment-naïve patients

scientific article (publication date: December 2008)

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

scientific article

Pathogenomics of Culex quinquefasciatus and meta-analysis of infection responses to diverse pathogens

scientific article

Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics

scientific article

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

scientific article (publication date: July 2014)

The Cassava Genome: Current Progress, Future Directions

scientific article published on 5 January 2012

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

scientific article

The Sequence of the Human Genome

scientific article

The bonobo genome compared with the chimpanzee and human genomes

scientific article

The complete genome and proteome of Mycoplasma mobile

scientific article

The genome of the domesticated apple (Malus × domestica Borkh.)

scientific article

The genome of woodland strawberry (Fragaria vesca)

scientific article

Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation

scientific article

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