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List of works by Alexander Dobin

A benchmark for RNA-seq quantification pipelines

scientific article

A limited set of transcriptional programs define major cell types

scientific article published on 29 July 2020

Abstract 1563: Spatial transcriptomics reveals heterogeneity and pathway dependencies of cancer associated fibroblasts in pancreatic ductal adenocarcinoma

scientific article published in 2022

Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods

scientific article published on 21 October 2019

Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse

correction of a scholarly article

Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes

scholarly article

Author Correction: Perspectives on ENCODE

scholarly article

Comparative cellular analysis of motor cortex in human, marmoset and mouse

scientific article published on 06 October 2021

Comparison of the transcriptional landscapes between human and mouse tissues

scientific article

Erratum to: A benchmark for RNA-seq quantification pipelines.

scientific article published on 30 September 2016

Erratum to: A benchmark for RNA-seq quantification pipelines.

scientific article published on 23 May 2016

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

scientific article published in April 2020

Expanded encyclopaedias of DNA elements in the human and mouse genomes

scientific article published on 29 July 2020

Genome-wide antisense transcription drives mRNA processing in bacteria

scientific article published on 28 November 2011

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

scientific article

Is it time to change the reference genome?

scientific article published on 09 August 2019

Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud

scientific article published on 31 March 2020

Mapping RNA-seq Reads with STAR

scientific article

Optimizing RNA-Seq Mapping with STAR.

scientific article

Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses

scientific article published on 07 March 2022

STAR: ultrafast universal RNA-seq aligner

scientific article (publication date: 2013)

STARsolo: accurate, fast and versatile mapping/quantification of single-cell and single-nucleus RNA-seq data

The fractured landscape of RNA-seq alignment: The default in our STARs

scholarly article published 16 November 2017

The fractured landscape of RNA-seq alignment: the default in our STARs

scientific article published in May 2018

The long noncoding RNA regulates inflammatory gene expression

article

The transcriptional diversity of 25 Drosophila cell lines

scientific article

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