List of works - James C Fuscoe

A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages

scientific article

ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research

scientific article

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

scientific article

Comprehensive RNA-Seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats

scientific article

Coupling global methylation and gene expression profiles reveal key pathophysiological events in liver injury induced by a methyl-deficient diet

scientific article published on 11 October 2010

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

scientific article

Development of public toxicogenomics software for microarray data management and analysis

scientific article

Gene expression profiling reveals underlying molecular mechanisms of the early stages of tamoxifen-induced rat hepatocarcinogenesis.

scientific article published on 14 July 2007

Interstrain differences in the severity of liver injury induced by a choline- and folate-deficient diet in mice are associated with dysregulation of genes involved in lipid metabolism

scientific article

Microarray scanner calibration curves: characteristics and implications

scientific article published on 15 July 2005

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project

scientific article published on 01 September 2006

Persistence of furan-induced epigenetic aberrations in the livers of F344 rats.

scientific article

QA/QC issues to aid regulatory acceptance of microarray gene expression data

scientific article

QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies

scientific article

Status of hepatic DNA methylome predetermines and modulates the severity of non-alcoholic fatty liver injury in mice

scientific article

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

scientific article

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

scientific article

The accurate prediction of protein family from amino acid sequence by measuring features of sequence fragments.

scientific article published in December 2009

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

scientific article

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

scientific article

Transcriptomic responses provide a new mechanistic basis for the chemopreventive effects of folic acid and tributyrin in rat liver carcinogenesis

scientific article

List of works by James C Fuscoe

A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages

ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples

Comprehensive RNA-Seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats

Coupling global methylation and gene expression profiles reveal key pathophysiological events in liver injury induced by a methyl-deficient diet

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

Development of public toxicogenomics software for microarray data management and analysis

Gene expression profiling reveals underlying molecular mechanisms of the early stages of tamoxifen-induced rat hepatocarcinogenesis.

Interstrain differences in the severity of liver injury induced by a choline- and folate-deficient diet in mice are associated with dysregulation of genes involved in lipid metabolism

Microarray scanner calibration curves: characteristics and implications

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project

Persistence of furan-induced epigenetic aberrations in the livers of F344 rats.

QA/QC issues to aid regulatory acceptance of microarray gene expression data

QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies

Status of hepatic DNA methylome predetermines and modulates the severity of non-alcoholic fatty liver injury in mice

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

The accurate prediction of protein family from amino acid sequence by measuring features of sequence fragments.

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

Transcriptomic responses provide a new mechanistic basis for the chemopreventive effects of folic acid and tributyrin in rat liver carcinogenesis