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List of works by Anna Lipzen

1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions

scientific article published on 25 March 2012

A Cryptochrome 2 mutation yields advanced sleep phase in humans

scientific article

A comparative genomics study of 23 Aspergillus species from section Flavi

scientific article published on 27 February 2020

A genetic signature of spina bifida risk from pathway-informed comprehensive gene-variant analysis

scientific article (publication date: 2011)

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

scientific article published on 06 October 2020

A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

article

Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential.

scientific article

Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta

scientific article published on 21 June 2019

Annotated Genome Sequence of the High-Biomass-Producing Yellow-Green Alga Tribonema minus

publication published on 17 June 2021

At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions

scientific article published on 31 October 2019

Author Correction: Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria

article

Bright luminescence of Vibrio fischeri aconitase mutants reveals a connection between citrate and the Gac/Csr regulatory system

scientific article published on 19 December 2014

Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina

scientific article published on 01 August 2018

Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts

scientific article published on 15 September 2018

Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger

scientific article published on 27 September 2019

Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes

scientific article published on 11 October 2019

Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus

scientific article

Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants

scientific article published in 2022

Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists

scientific article published on 7 January 2018

Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales.

scientific article

Comparative genomics of Saccharomyces cerevisiae natural isolates for bioenergy production

scientific article published on September 2014

Comparative genomics of biotechnologically important yeasts

scientific article

Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes

scientific article published on 08 October 2020

Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi.

scientific article published on 20 April 2018

Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi

scientific article published on 23 December 2020

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

scientific article

Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae

scientific article published on 01 August 2019

Complete Genome Sequence of Sulfolobus solfataricus Strain 98/2 and Evolved Derivatives

scientific article

Complete Genome Sequence of an Evolved Thermotoga maritima Isolate.

scientific article

Complete Genome Sequences of Evolved Arsenate-Resistant Metallosphaera sedula Strains

scientific article published on October 2015

Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613

scientific article published on 03 September 2019

Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

scientific article published on 12 June 2020

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

scientific article

Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta

scientific article published on 09 August 2019

Corrigendum to "Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens" [J. Biotechnol. 380 (2020) 35-39]

scientific article published on 14 January 2020

Corrigendum: Physiology of Highly Radioresistant <i>Escherichia coli</i> After Experimental Evolution for 100 Cycles of Selection

scientific article published on 11 December 2020

CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner

scientific article published on 03 March 2021

Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium

scientific article published on 26 November 2019

Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation

scientific article published on 25 June 2015

Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass

scientific article published on 09 April 2019

Dichomitus squalens partially tailors its molecular responses to the composition of solid wood

scientific article published on 18 October 2018

Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates

scientific article published on 27 September 2018

Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates

scientific article published on 26 January 2017

Draft Genome Sequence of Enterobacter cloacae Strain JD6301.

scientific article

Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass

scientific article published on 28 April 2016

Draft Genome Sequence of Neurospora crassa Strain FGSC 73.

scientific article

Draft Genome Sequence of Tuber borchii Vittad., a Whitish Edible Truffle.

scientific article

Draft Genome Sequence of a Rare Smut Relative, Tilletiaria anomala UBC 951.

scientific article

Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea

scientific article published on 12 December 2019

Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2.

scientific article

Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens

scientific article published on 02 May 2019

Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12

scientific article

Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes

scientific article published on 18 February 2016

Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum.

scientific article

Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis

scientific article published on 01 May 2022

Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus

scientific article

Enhanced nutrient uptake is sufficient to drive emergent cross-feeding between bacteria in a synthetic community

scientific article published on 12 August 2020

Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails

scientific article published on 08 October 2018

Erratum for Walker et al., Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin

scientific article published on 26 May 2016

Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica

scientific article published in 2021

Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.

scientific article

Expanding the Limits of Thermoacidophily in the Archaeon Sulfolobus solfataricus by Adaptive Evolution.

scientific article published on 20 November 2015

Experimental Evolution of Extreme Resistance to Ionizing Radiation in Escherichia coli after 50 Cycles of Selection

scientific article published on 26 March 2019

Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

scientific article

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

scientific article published on 19 December 2017

Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin

scientific article published on 25 February 2016

Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers

scientific article published on 08 December 2019

Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage

scientific article published on 3 March 2016

GalR, GalX and AraR co-regulate d-galactose and l-arabinose utilization in Aspergillus nidulans

scientific article published on 25 February 2022

Genetic determinants of endophytism in the Arabidopsis root mycobiome

scientific article published on 10 December 2021

Genetic isolation between two recently diverged populations of a symbiotic fungus

scientific article published on 2 April 2015

Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria

article

Genome expansion and lineage-specific genetic innovations in the world's largest organisms (Armillaria)

article

Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

scientific article published on 23 September 2019

Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation.

scientific article published on 15 July 2015

Genome sequence of the model rice variety KitaakeX

scientific article published on 27 November 2019

Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants

scientific article published on 11 November 2019

Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species

scientific article

Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae

scientific article published on 24 December 2013

Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors

scientific article published on 2 March 2018

Genome-wide association analysis of stalk biomass and anatomical traits in maize

scientific article published on 31 January 2019

Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity

scientific article published on 19 November 2020

Genomic Sequence Variation Analysis by Resequencing

scientific article published on 01 January 2018

Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum

scientific article published on 9 May 2014

Genomic and Genetic Insights Into a Cosmopolitan Fungus, (Eurotiales)

scientific article published on 13 December 2018

Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation

scientific article published on 09 August 2021

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

scientific article published on 27 January 2021

Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies.

article

Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems

scientific article

Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens

scientific article published on 14 November 2019

Horizontal transfer of carbohydrate metabolism genes into ectomycorrhizal Amanita.

scientific article

Identification of a Novel Nematotoxic Protein by Challenging the Model Mushroom Coprinopsis cinerea with a Fungivorous Nematode

scientific article

Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator

scientific article published on 07 February 2020

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

scientific article

Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases

scientific article published on 30 August 2019

Integrative genomics reveals paths to sex dimorphism in Salix purpurea L

scientific article published on 01 August 2021

Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass

scientific article published on 23 July 2018

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

article

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

scientific article published on 12 October 2020

Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism

scientific article published on 01 March 2020

Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species ⬇️

scientific article published on 9 January 2018

Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9

scientific article published on 04 March 2020

Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.

scientific article published on 9 April 2018

Megaphylogeny resolves global patterns of mushroom evolution

scientific article published on 18 March 2019

Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens

scientific article published on 25 November 2019

Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring

scientific article published on 06 August 2019

Multiple Maize Reference Genomes Impact the Identification of Variants by Genome-Wide Association Study in a Diverse Inbred Panel

scientific article published on 01 June 2019

Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair

scientific article

Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates

publication published on 20 April 2022

Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives

scientific article published on 15 June 2021

PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

scientific article published on 12 November 2019

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

scientific article published on 12 November 2018

Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota

scientific article published on 12 January 2019

Physiology of Highly Radioresistant Escherichia coli After Experimental Evolution for 100 Cycles of Selection

scientific article published on 22 September 2020

Population level analysis of evolved mutations underlying improvements in plant hemicellulose and cellulose fermentation by Clostridium phytofermentans

scientific article published on 22 January 2014

QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient

scientific article published on 10 June 2019

Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa.

scientific article published on September 2011

Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica

scientific article published in 2018

Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC

article

Revisiting a 'simple' fungal metabolic pathway reveals redundancy, complexity and diversity

scientific article published on 05 March 2021

Salinity tolerance mechanisms of an Arctic Pelagophyte using comparative transcriptomic and gene expression analysis

scientific article published on 25 May 2022

Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum

scientific article

Single-parent expression drives dynamic gene expression complementation in maize hybrids

scientific article published on 24 October 2020

Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea

scientific article published on 28 October 2015

Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola

scientific article published on 01 August 2018

Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

scientific article published on 13 April 2020

TIMELESS mutation alters phase responsiveness and causes advanced sleep phase

scientific article published on 28 May 2019

The Physcomitrella patens gene atlas project: large scale RNA-seq based expression data.

scientific article published on 22 April 2018

The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds

scientific article published on 20 September 2019

The genome of Xylona heveae provides a window into fungal endophytism

scientific article published on 22 October 2015

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

scientific article published in Nature Communications

The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.

scientific article published on 23 June 2015

The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet

article

The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus

scientific article published on 28 February 2020

Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network

scientific article published on 14 November 2019

Transcriptomic atlas of mushroom development highlights an independent origin of complex multicellularity

Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

scientific article published on 22 March 2019

Unraveling the regulation of sugar beet pulp utilization in the industrially relevant fungus <i>Aspergillus niger</i>

scientific article published on 12 March 2022

Variation and Inheritance of Small RNAs in Maize Inbreds and F1 Hybrids

scientific article published on 01 October 2019

Visual Comparative Omics of Fungi for Plant Biomass Deconstruction

scientific article published on 24 August 2016

Widespread adenine N6-methylation of active genes in fungi.

scientific article

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