List of works by Ioanna Pagani

Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T

scientific article

Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens

scientific article published on January 2013

Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens

scientific article published on 14 March 2013

Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3) ⬇️

scientific article

Complete genome sequence of Bacteroides helcogenes type strain (P 36-108).

scientific article

Complete genome sequence of Bacteroides salanitronis type strain (BL78).

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Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1)

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Complete genome sequence of Cellulophaga algicola type strain (IC166)

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Complete genome sequence of Cellulophaga lytica type strain (LIM-21).

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Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

scientific article

Complete genome sequence of Dehalobacter restrictus PER-K23(T.).

scientific article published on 30 July 2013

Complete genome sequence of Deinococcus maricopensis type strain (LB-34). ⬇️

scientific article

Complete genome sequence of Desulfobulbus propionicus type strain (1pr3)

scientific article

Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production

scientific article (publication date: 20 December 2013)

Complete genome sequence of Haliscomenobacter hydrossis type strain (O)

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Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)).

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Complete genome sequence of Isosphaera pallida type strain (IS1B).

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Complete genome sequence of Leadbetterella byssophila type strain (4M15).

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Complete genome sequence of Mahella australiensis type strain (50-1 BON).

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Complete genome sequence of Marivirga tractuosa type strain (H-43) ⬇️

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Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1).

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Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

scientific article published on 25 February 2013

Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509).

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Complete genome sequence of Oceanithermus profundus type strain (506) ⬇️

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Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). ⬇️

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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and eme

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Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845).

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Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845T)

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Complete genome sequence of Serratia plymuthica strain AS12.

scientific article

Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).

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Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)

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Complete genome sequence of Thermaerobacter marianensis type strain (7p75a)

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Complete genome sequence of Treponema succinifaciens type strain (6091).

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Complete genome sequence of Weeksella virosa type strain (9751).

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Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).

scientific article

Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09.

scientific article published on December 2011

Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney

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Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)).

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Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).

scientific article published on 15 April 2013

Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL)

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Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)).

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Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262).

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Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113)

scientific article published on 23 September 2011

Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift

scientific article published on 20 May 2013

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A)

scientific article

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).

scientific article published on 15 April 2013

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

scientific article published on 20 July 2012

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).

scientific article

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4

scientific article published on 15 August 2015

Complete genome sequence of the plant-associated Serratia plymuthica strain AS13.

scientific article published on 26 September 2012

Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9

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Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T))

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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Spha

scientific article

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T))

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Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent

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Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2))

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Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3

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Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

scientific article

Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis

scientific article

Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils

scientific article published on 11 July 2013

Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina

scientific article

Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis

scientific article published on 14 March 2013

Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida

scientific article published on 21 March 2013

Genome Sequence of Streptomyces viridosporus Strain T7A ATCC 39115, a Lignin-Degrading Actinomycete

scientific article (publication date: 5 July 2013)

Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece

scientific article

Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl

scientific article published on 02 October 2013

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)).

scientific article published on October 2012

Genome sequence of the Lebeckia ambigua-nodulating "Burkholderia sprentiae" strain WSM5005(T.).

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Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557(T.).

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Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471

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Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597.

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Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring

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Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.

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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1

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Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))

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Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T))

scientific article published on 4 December 2012

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva

scientific article published on 25 May 2013

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)).

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Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417.

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Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10)

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Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio

scientific article published on 02 October 2013

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)).

scientific article

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia

scientific article

Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)).

scientific article published on October 2012

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).

scientific article published on 25 May 2013

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.

scientific article published on 15 April 2013

High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater

scientific article

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)).

scientific article published on 15 April 2013

IMG/M 4 version of the integrated metagenome comparative analysis system

scientific article published on 16 October 2013

IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project

scientific article

IMG/M: the integrated metagenome data management and comparative analysis system

scientific article

Metagenomes from two microbial consortia associated with Santa Barbara seep oil.

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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

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Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139). ⬇️

scientific article

Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4

scientific article published on 30 July 2013

Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20).

scientific article published on 23 September 2011

Permanent Draft Genome Sequence of Nocardia sp. BMG111209, an Actinobacterium Isolated from Nodules of Casuarina glauca

scientific article published on 04 August 2016

Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca

scientific article published on 04 August 2016

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).

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Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58

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Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling

scientific article published on 25 February 2013

Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin

scientific article published on 24 January 2013

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