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List of works by Ernest Szeto

A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans

scientific article

An experimental metagenome data management and analysis system

scientific article

Annotation of metagenome short reads using proxygenes

scientific article published on August 2008

Bringing large-scale multiple genome analysis one step closer: ScalaBLAST and beyond

Complete genome sequence of Dehalobacter restrictus PER-K23(T.).

scientific article published on 30 July 2013

Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production

scientific article (publication date: 20 December 2013)

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

scientific article published on 25 February 2013

Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

scientific article

Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis

scientific article

Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils

scientific article published on 11 July 2013

Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina

scientific article

Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis

scientific article published on 14 March 2013

Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida

scientific article published on 21 March 2013

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

scientific article published on 21 March 2016

Genome Sequence of Streptomyces viridosporus Strain T7A ATCC 39115, a Lignin-Degrading Actinomycete

scientific article (publication date: 5 July 2013)

Genome sequence of the Lebeckia ambigua-nodulating "Burkholderia sprentiae" strain WSM5005(T.).

scientific article

Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557(T.).

scientific article

Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.

scientific article

High-quality draft genome sequence of the Opitutaceae bacterium strain TAV1, a symbiont of the wood-feeding termite Reticulitermes flavipes

scientific article

IMG 4 version of the integrated microbial genomes comparative analysis system

scientific article

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

scientific article published on 14 July 2015

IMG/M 4 version of the integrated metagenome comparative analysis system

scientific article published on 16 October 2013

IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project

scientific article

IMG/M: a data management and analysis system for metagenomes

scientific article

IMG/M: integrated genome and metagenome comparative data analysis system

scientific article

IMG/M: the integrated metagenome data management and comparative analysis system

scientific article

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

scientific article published on 30 October 2016

IMG: the Integrated Microbial Genomes database and comparative analysis system

scientific article

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

scientific article

Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4

scientific article published on 30 July 2013

Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58

scientific article

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

scientific article

Symbiosis insights through metagenomic analysis of a microbial consortium

scientific article

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

scientific article

The Integrated Microbial Genomes (IMG) System: An Expanding Comparative Analysis Resource

The integrated microbial genomes (IMG) system

scientific article

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

scientific article

The integrated microbial genomes system: an expanding comparative analysis resource

scientific article

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

scientific article published on 24 February 2016

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

scientific article

Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling

scientific article published on 25 February 2013

Using IMG: Comparative Analysis with the Integrated MicrobialGenomes System

Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin

scientific article published on 24 January 2013

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