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List of works by Yves Gibon

1H-NMR metabolomic profiling reveals a distinct metabolic recovery response in shoots and roots of temporarily drought-stressed sugar beets.

scientific article

A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness

scientific article published on 17 November 2004

A fluorometric assay for trehalose in the picomole range

scientific article published on 20 June 2013

A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

scientific article

ADP-glucose pyrophosphorylase is activated by posttranslational redox-modification in response to light and to sugars in leaves of Arabidopsis and other plant species

scientific article published on 11 September 2003

Absence of Symbiotic Leghemoglobins Alters Bacteroid and Plant Cell Differentiation During Development of Lotus japonicus Root Nodules

scientific article published on 01 July 2009

Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants

scientific article published on 01 September 2020

Adjustment of diurnal starch turnover to short days: depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilization, accumulation of sugars and post-translational activation of ADP-glucose pyrophosphorylase in the fo

scientific article published in September 2004

Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis

scientific article published on 25 November 2008

Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods

scientific article published on 19 February 2009

An assessment of the physiological properties of the so-called compatible solutes using in vitro experiments with leaf discs

scientific article published in 2003

Analysis of Arabidopsis natural variation in biomass accumulation and metabolism

Analysis of enzyme activities.

scientific article

Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen

scientific article published on 26 February 2010

Arabidopsis plants acclimate to water deficit at low cost through changes of carbon usage: an integrated perspective using growth, metabolite, enzyme, and gene expression analysis

scientific article published on 14 July 2010

Aspects of experimental design for plant metabolomics experiments and guidelines for growth of plant material

scientific article published on January 2012

Association mapping across numerous traits reveals patterns of functional variation in maize

scientific article

Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species

scientific article published on 27 June 2020

Bread Wheat (Triticum aestivum L.) Grain Protein Concentration Is Related to Early Post-Flowering Nitrate Uptake under Putative Control of Plant Satiety Level

scientific article published on 17 February 2016

CORRECTION: Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modelling Approach to Link Leaf Physiology to Kernel Yield

scientific article published on 5 April 2018

Central Metabolism Is Tuned to the Availability of Oxygen in Developing Melon Fruit.

scientific article published on 15 May 2019

Characterization of a NADH-Dependent Glutamate Dehydrogenase Mutant of Arabidopsis Demonstrates the Key Role of this Enzyme in Root Carbon and Nitrogen Metabolism ⬇️

scientific article published on October 9, 2012

Comparative metabolomics and glycolysis enzyme profiling of embryogenic and nonembryogenic grape cells.

scientific article

Comparative transcriptional profiling analysis of developing melon (Cucumis melo L.) fruit from climacteric and non-climacteric varieties.

scientific article published on 9 June 2015

Constraint-Based Modeling Highlights Cell Energy, Redox Status and α-Ketoglutarate Availability as Metabolic Drivers for Anthocyanin Accumulation in Grape Cells Under Nitrogen Limitation.

scientific article

Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays

scientific article

Corrigendum to "Integrating proteomics and enzymatic profiling to decipher seed metabolism affected by temperature in seed dormancy and germination" [Plant Sci. 269 (2018) 118-125]

scientific article published on 22 May 2018

Deciphering genetic diversity and inheritance of tomato fruit weight and composition through a systems biology approach

scientific article published on 22 October 2013

Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function

article

Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase

scientific article published on 01 September 2007

Dissection of the molecular bases of genotype x environment interactions: a study of phenotypic plasticity of Saccharomyces cerevisiae in grape juices

scientific article published on 09 November 2018

Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves?

scientific article published on 08 December 2006

Ecological and metabolic implications of the nurse effect of <i>Maihueniopsis camachoi</i> in the Atacama Desert

scientific article published on 20 November 2023

Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii

scientific article published on 24 March 2010

Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield.

scientific article

Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis

scientific article published in July 2004

Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses

scientific article

Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics.

scientific article published on 28 January 2011

Fine quantitative trait loci mapping of carbon and nitrogen metabolism enzyme activities and seedling biomass in the maize IBM mapping population

scientific article published on 22 October 2010

Fortune telling: metabolic markers of plant performance

scientific article

Fruit Salad in the Lab: Comparing Botanical Species to Help Deciphering Fruit Primary Metabolism

scientific article published on 09 July 2019

Fruit setting rewires central metabolism via gibberellin cascades

scientific article published on 03 September 2020

Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo-reduplication for fruit growth in tomato.

scientific article published on 4 March 2010

GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling

article

GMD@CSB.DB: the Golm Metabolome Database

scientific article

Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity

scientific article

Genetic control of abiotic stress-related specialized metabolites in sunflower

scientific article published in 2024

Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population

scientific article published on 27 April 2015

Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus

article

Get the Balance Right: ROS Homeostasis and Redox Signalling in Fruit

scientific article published on 18 September 2019

Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes

scientific article

Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato

scientific article published in November 2005

Identification and functional study of a mild allele of SlDELLA gene conferring the potential for improved yield in tomato

scientific article published in Scientific Reports

Identification of enzyme activity quantitative trait loci in a Solanum lycopersicum x Solanum pennellii introgression line population

scientific article published on 2 September 2011

Identification of the Arabidopsis Calmodulin-Dependent NAD+ Kinase That Sustains the Elicitor-Induced Oxidative Burst

scientific article published on 25 September 2019

Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions

scientific article published in 2013

Impacts of Strain PsJN on Tomato ( L.) Under High Temperature

scientific article published on 18 October 2018

Increased C availability at elevated carbon dioxide concentration improves N assimilation in a legume

scientific article published on 01 August 2006

Integrating proteomics and enzymatic profiling to decipher seed metabolism affected by temperature in seed dormancy and germination.

scientific article published on 2 February 2018

Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes

scientific article published on 17 August 2006

Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana

scientific article published on 18 August 2008

Interaction between exogenous glycine betaine and the photorespiratory pathway in canola leaf discs

article published in 2002

Is Change in Ovary Carbon Status a Cause or a Consequence of Maize Ovary Abortion in Water Deficit during Flowering?

scientific article

Maize metabolome and proteome responses to controlled cold stress partly mimic early-sowing effects in the field and differ from those of Arabidopsis

scientific article published on 07 January 2021

Measurement of Tricarboxylic Acid Cycle Enzyme Activities in Plants

scientific article published on 01 January 2017

Metabolic studies in plant organs: don't forget dilution by growth.

scientific article published on 11 March 2014

Metabolite profiling and integrative modeling reveal metabolic constraints for carbon partitioning under nitrogen starvation in the green algae Haematococcus pluvialis.

scientific article

Metabolite profiling in plant biology: platforms and destinations

scientific article

Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment

article

Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers

scientific article published on 30 March 2019

Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships

scientific article published on 11 April 2015

Metabolomics to Exploit the Primed Immune System of Tomato Fruit

scientific article published on 06 March 2020

Metabotyping of 30 maize hybrids under early-sowing conditions reveals potential marker-metabolites for breeding

scientific article published on 26 September 2018

Model-assisted analysis of sugar metabolism throughout tomato fruit development reveals enzyme and carrier properties in relation to vacuole expansion

scientific article

Modeling Protein Destiny in Developing Fruit

scientific article published on 23 April 2019

Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing Solanum lycopersicum (tomato) fruit.

scientific article published on 10 November 2014

Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites

scientific article published in 2023

Multilevel analysis of primary metabolism provides new insights into the role of potassium nutrition for glycolysis and nitrogen assimilation in Arabidopsis roots

scientific article

Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range

scientific article

Multilevel genomics analysis of carbon signalling during low carbon availability: coordinating the supply and utilisation of carbon in a fluctuating environment

article

Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves

scientific article published on 28 December 2011

Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions

scientific article published on 10 August 2010

Non-structural carbohydrates in woody plants compared among laboratories

scientific article

Omeprazole Treatment Enhances Nitrogen Use Efficiency Through Increased Nitrogen Uptake and Assimilation in Corn

scientific article published on 04 December 2019

Omics Data Reveal Putative Regulators of Einkorn Grain Protein Composition under Sulphur deficiency

scientific article published on 15 April 2020

Overexpression of plastid transketolase in tobacco results in a thiamine auxotrophic phenotype

scientific article published on 10 February 2015

Ozone affects ascorbate and glutathione biosynthesis as well as amino acid contents in three Euramerican poplar genotypes.

scientific article published in March 2014

PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

scientific article

Peptide filtering differently affects the performances of XIC-based quantification methods

article

Post-flowering nitrate uptake in wheat is controlled by N status at flowering, with a putative major role of root nitrate transporter NRT2.1.

scientific article published on 23 March 2015

Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience

scientific article published in 2022

Profiling sugar metabolism during fruit development in a peach progeny with different fructose-to-glucose ratios.

scientific article

Proline accumulation in canola leaf discs subjected to osmotic stress is related to the loss of chlorophylls and to the decrease of mitochondrial activity

Putting primary metabolism into perspective to obtain better fruits.

scientific article

QTL Analyses in Multiple Populations Employed for the Fine Mapping and Identification of Candidate Genes at a Locus Affecting Sugar Accumulation in Melon (Cucumis melo L.).

scientific article published on 26 September 2017

Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato

scientific article published on 9 October 2003

Regulation of Pyridine Nucleotide Metabolism During Tomato Fruit Development Through Transcript and Protein Profiling

scientific article published on 11 October 2019

Regulation of carbon metabolism in two maize sister lines contrasted for chilling tolerance

scientific article published on 01 January 2020

Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism

scientific article published on 28 January 2014

Resolving the role of plant glutamate dehydrogenase: II. Physiological characterization of plants overexpressing the two enzyme subunits individually or simultaneously

scientific article published on 27 July 2013

Respiration climacteric in tomato fruits elucidated by constraint-based modelling

scientific article published on 15 November 2016

Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis.

scientific article published on 13 October 2009

Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel enzymic cycling system

scientific article

Silencing of the tomato sugar partitioning affecting protein (SPA) modifies sink strength through a shift in leaf sugar metabolism.

scientific article

SlARF4, an auxin response factor involved in the control of sugar metabolism during tomato fruit development

scientific article published on 22 January 2013

Starch as a major integrator in the regulation of plant growth

scholarly article

Starch synthesis in potato tubers is regulated by post-translational redox modification of ADP-glucose pyrophosphorylase: a novel regulatory mechanism linking starch synthesis to the sucrose supply

scientific article

Steps towards an integrated view of nitrogen metabolism

scientific article

Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana ⬇️

scientific article published on July 2006

Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis

scientific article

Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings

article

The art of growing plants for experimental purposes: a practical guide for the plant biologist

article

The enigmatic contribution of mitochondrial function in photosynthesis

scientific article published on 5 February 2008

The potential of integrative phenomics to harness underutilized crops for improving stress resilience

scientific article published in 2023

Transcriptional and metabolic alternations rebalance wheat grain storage protein accumulation under variable nitrogen and sulfur supply

scientific article

Transcriptomic and proteomic data in developing tomato fruit

scientific article published on 17 December 2019

Untargeted Analysis of Semipolar Compounds by LC-MS and Targeted Analysis of Fatty Acids by GC-MS/GC-FID: From Plant Cultivation to Extract Preparation

scientific article published on 01 January 2018

Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity

scientific article

Variation of enzyme activities and metabolite levels in 24 Arabidopsis accessions growing in carbon-limited conditions

scientific article published in 2006

Water deficits uncouple growth from photosynthesis, increase C content, and modify the relationships between C and growth in sink organs.

scientific article published on 14 January 2011

Why measure enzyme activities in the era of systems biology?

scientific article published on 11 December 2013

Wine yeast phenomics: A standardized fermentation method for assessing quantitative traits of Saccharomyces cerevisiae strains in enological conditions

scientific article

Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy

scientific article published on 19 February 2009

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