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List of works by Atif Shahab

A common BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer

scientific article

A global map of p53 transcription-factor binding sites in the human genome

scientific article (publication date: 13 January 2006)

CTCF-mediated functional chromatin interactome in pluripotent cells

scientific article

Coherence analysis discriminates between retroviral integration patterns in CD34(+) cells transduced under differing clinical trial conditions

scientific article published on 29 April 2015

Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes

scientific article

Deconvolution of chromatin immunoprecipitation-microarray (ChIP-chip) analysis of MBF occupancies reveals the temporal recruitment of Rep2 at the MBF target genes

scientific article

Erratum: CTCF-mediated functional chromatin interactome in pluripotent cells

scientific article published in August 2011

Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)

scientific article (publication date: June 2007)

Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation

scientific article

Genome-wide analysis reveals methyl-CpG-binding protein 2-dependent regulation of microRNAs in a mouse model of Rett syndrome

scientific article

Genome-wide mapping of RELA(p65) binding identifies E2F1 as a transcriptional activator recruited by NF-kappaB upon TLR4 activation

scientific article published on August 2007

Global mapping of c-Myc binding sites and target gene networks in human B cells

scientific article

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Long span DNA paired-end-tag (DNA-PET) sequencing strategy for the interrogation of genomic structural mutations and fusion-point-guided reconstruction of amplicons.

scientific article

Quality assessment of the Affymetrix U133A&B probesets by target sequence mapping and expression data analysis.

scientific article

Transcriptional consequences of genomic structural aberrations in breast cancer

scientific article

Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells

scientific article

Whole-genome reconstruction and mutational signatures in gastric cancer.

scientific article

webMGR: an online tool for the multiple genome rearrangement problem

scientific article

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