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List of works by Kazuyuki Aihara

25th Annual Computational Neuroscience Meeting: CNS-2016

scientific article

A coherent Ising machine for 2000-node optimization problems

scientific article published on 20 October 2016

A discriminative approach for identifying domain-domain interactions from protein-protein interactions

scientific article

A fully programmable 100-spin coherent Ising machine with all-to-all connections

scientific article

A hierarchical multi-oscillator network orchestrates the Arabidopsis circadian system

scientific article published in September 2015

A mixed analog/digital chaotic neuro-computer system for quadratic assignment problems

scientific article published on June 2005

A model for the circadian rhythm of cyanobacteria that maintains oscillation without gene expression

scientific article

A new protocol for intermittent androgen suppression therapy of prostate cancer with unstable saddle-point dynamics

scientific article published on 10 February 2014

Ability of intermittent androgen suppression to selectively create a non-trivial periodic orbit for a type of prostate cancer patients

scientific article

Adaptation to the edge of chaos in one-dimensional chaotic maps.

scientific article published on 18 December 2006

Amelioration of ischemia/reperfusion-induced myocardial infarction by the 2-alkynyladenosine derivative 2-octynyladenosine (YT-146)

scientific article published on 01 April 2006

An attempt to reveal a role of a transcription/translation feedback loop in the cyanobacterial KaiC protein-based circadian system by using a semi-synthetic method.

scientific article published in January 2008

An explanation of contextual modulation by short-range isotropic connections and orientation map geometry in the primary visual cortex.

scientific article published on 25 November 2004

An optimal number of molecules for signal amplification and discrimination in a chemical cascade

scientific article published on 23 June 2006

Application of joint permutations for predicting coupled time series

scientific article published on December 2013

Approximating high-dimensional dynamics by barycentric coordinates with linear programming

scientific article published on January 2015

Arm-use dependent lateralization of gamma and beta oscillations in primate medial motor areas

scientific article published on 17 June 2014

Array-enhanced coherence resonance and forced dynamics in coupled FitzHugh-Nagumo neurons with noise.

scientific article published on 6 May 2002

Asynchronous updating induces order in threshold coupled systems

scientific article published on 10 October 2007

Automatic Aftershock Forecasting: A Test Using Real‐Time Seismicity Data in Japan

scholarly article by Takahiro Omi et al published 20 September 2016 in Bulletin of the Seismological Society of America

Automatic control and tracking of periodic orbits in chaotic systems

scientific article published on 20 June 2007

Automatic modeling of signaling pathways by network flow model

scientific article published in April 2009

Back-propagation learning of infinite-dimensional dynamical systems.

scientific article published in October 2003

Bayesian inference explains perception of unity and ventriloquism aftereffect: identification of common sources of audiovisual stimuli

scientific article published in December 2007

Bidirectional modulation of neuronal responses by depolarizing GABAergic inputs.

scientific article published on 30 December 2005

Bifurcation Analysis on Phase-Amplitude Cross-Frequency Coupling in Neural Networks with Dynamic Synapses

scientific article

Bifurcation analysis of a mathematical model of atopic dermatitis to determine patient-specific effects of treatments on dynamic phenotypes.

scientific article published on 3 April 2018

Bifurcations and strange nonchaotic attractors in a phase oscillator model of glacial–interglacial cycles ⬇️

Bifurcations in a mathematical model for circadian oscillations of clock genes

scientific article

Boltzmann Sampling by Degenerate Optical Parametric Oscillator Network for Structure-Based Virtual Screening

article published in 2016

Boosting specificity of MEG artifact removal by weighted support vector machine

scientific article published in January 2013

Cardioprotective Effects of 2-octynyladenosine (YT-146) in Ischemic/Reperfused Rat Hearts ⬇️

scientific article published on February 1, 2011

Cell-to-cell infection by HIV contributes over half of virus infection

scientific article published on 6 October 2015

Change in types of neuronal excitability via bifurcation control

scientific article

Chaotic Boltzmann machines

scientific article published on January 2013

Chaotic Ising-like dynamics in traffic signals

scientific article published on 24 January 2013

Chaotic dynamics as a possible mechanism of rapid change of hippocampal local field activity between theta rhythm and large irregular activity

scientific article

Chaotic phase synchronization in bursting-neuron models driven by a weak periodic force

scientific article published on 9 July 2012

Characterizing global evolutions of complex systems via intermediate network representations.

scientific article published on 25 May 2012

Coarse-graining time series data: Recurrence plot of recurrence plots and its application for music.

scientific article

Coding of temporally varying signals in networks of spiking neurons with global delayed feedback

scientific article published in October 2005

Combinatorial optimization using dynamical phase transitions in driven-dissipative systems.

scientific article published on 14 February 2017

Comparison between mathematical models of intermittent androgen suppression for prostate cancer

scientific article published on 15 November 2014

Complex and transitive synchronization in a frustrated system of calling frogs.

scientific article published on 21 March 2011

Computational model of visual hallucination in dementia with Lewy bodies

scientific article published on 16 September 2014

Construction of genetic oscillators with interlocked feedback networks.

scientific article published on 28 March 2006

Controlled generation of switching dynamics among metastable states in pulse-coupled oscillator networks

scientific article published in October 2015

Controlling the onset of Hopf bifurcation in the Hodgkin-Huxley model

scientific article published on 26 June 2008

Correction: Quantifying Collective Attention from TweetStream.

scientific article published on 17 May 2013

Correlated firing in a feedforward network with Mexican-hat-type connectivity

scientific article published in September 2005

Corrigendum: Quantifying the Antiviral Effect of IFN on HIV-1 Replication in Cell Culture

scientific article published on 22 October 2015

Cyanobacterial cell lineage analysis of the spatiotemporal hetR expression profile during heterocyst pattern formation in Anabaena sp. PCC 7120

scientific article

Decision-making ability of Physarum polycephalum enhanced by its coordinated spatiotemporal oscillatory dynamics

scientific article published on 12 April 2016

Deformation of attractor landscape via cholinergic presynaptic modulations: a computational study using a phase neuron model

scientific article

Describing high-dimensional dynamics with low-dimensional piecewise affine models: applications to renewable energy

scientific article published in June 2012

Detecting causality from nonlinear dynamics with short-term time series

scientific article published on 12 December 2014

Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers

scientific article published on 29 March 2012

Detection of cellular rhythms and global stability within interlocked feedback systems.

scientific article published on 12 January 2007

Devaney's chaos on recurrence plots

scientific article published on 23 September 2010

Development of a mathematical model that predicts the outcome of hormone therapy for prostate cancer

scientific article

Dimensionless embedding for nonlinear time series analysis

scientific article published on 19 September 2017

Discharge synchrony during the transition of behavioral goal representations encoded by discharge rates of prefrontal neurons

scientific article

Dual coding hypotheses for neural information representation.

scientific article published on 23 September 2006

Duality of rate coding and temporal coding in multilayered feedforward networks.

scientific article published in January 2003

Dynamic switching of neural codes in networks with gap junctions

scientific article published on 2 August 2006

Dynamical robustness in complex networks: the crucial role of low-degree nodes

scientific article published on 25 January 2012

Dynamics between order and chaos in conceptual models of glacial cycles

article

Dynamics of gene regulatory networks with cell division cycle.

scientific article published on 15 July 2004

Early diagnosis of complex diseases by molecular biomarkers, network biomarkers, and dynamical network biomarkers

scientific article published on 17 June 2013

Effects of seasonal variation patterns on recurrent outbreaks in epidemic models

scientific article published on 4 October 2012

Enhancing synchronization stability in a multi-area power grid

scientific article published on 26 May 2016

Ergodicity of spike trains: when does trial averaging make sense?

scientific article published in June 2003

Evaluating roles of nodes in optimal allocation of vaccines with economic considerations

scientific article

Evaluation of the performance of mechanisms for noise attenuation in a single-gene expression

scientific article published on 25 February 2005

Evolution of cooperation on adaptively weighted networks.

scientific article published on 14 December 2010

Experimental and theoretical bases for mechanisms of antigen discrimination by T cells

scientific article

Experimental distinction between chaotic and strange nonchaotic attractors on the basis of consistency

scientific article published in June 2013

Feedback Regulation and Its Efficiency in Biochemical Networks ⬇️

Filtering of spatial bias and noise inputs by spatially structured neural networks

scientific article

Fisher information for spike-based population decoding.

scientific article published on 30 August 2006

Forecasting large aftershocks within one day after the main shock

scientific article published on January 2013

Functional relevance of 'excitatory' gaba actions in cortical interneurons: a dynamical systems approach

scientific article

Gene function prediction using labeled and unlabeled data

scientific article

Generalized Bienenstock-Cooper-Munro rule for spiking neurons that maximizes information transmission.

scientific article

Global and local synchrony of coupled neurons in small-world networks.

scientific article published on 8 April 2004

Graph distance for complex networks

scientific article published on 11 October 2016

HIV-1 Vpr accelerates viral replication during acute infection by exploitation of proliferating CD4+ T cells in vivo

scientific article

Hawkes process model with a time-dependent background rate and its application to high-frequency financial data

scientific article published on 5 July 2017

Hybrid optimal scheduling for intermittent androgen suppression of prostate cancer

scientific article published on 01 December 2010

Identifying critical differentiation state of MCF-7 cells for breast cancer by dynamical network biomarkers

scientific article published on 28 July 2015

Identifying critical transitions and their leading biomolecular networks in complex diseases

scientific article

Identifying early-warning signals of critical transitions with strong noise by dynamical network markers

scientific article

Identifying hidden common causes from bivariate time series: a method using recurrence plots

scientific article

Identifying viral parameters from in vitro cell cultures

scientific article published on 4 September 2012

Impacts of clustering on interacting epidemics.

scientific article published on 28 March 2012

Implementation of a Real‐Time System for Automatic Aftershock Forecasting in Japan

Impulsive control of stochastic systems with applications in chaos control, chaos synchronization, and neural networks

scientific article

Increased firing irregularity as an emergent property of neural-state transition in monkey prefrontal cortex

scientific article

Intercellular communications induced by random fluctuations.

scientific article published in January 2004

Intermittent Androgen Suppression: Estimating Parameters for Individual Patients Based on Initial PSA Data in Response to Androgen Deprivation Therapy

scientific article

Involvement of the prefrontal cortex in problem solving

scientific article published on January 2009

Itinerant memory dynamics and global bifurcations in chaotic neural networks.

scientific article published in September 2003

Logistic Regression for Single Trial EEG Classification ⬇️

scientific article published in January 2007

Long-term fluctuations in globally coupled phase oscillators with general coupling: finite size effects.

scientific article published in March 2012

Mathematical modelling of prostate cancer growth and its application to hormone therapy ⬇️

scientific article published on November 13, 2010

Mathematically modelling and controlling prostate cancer under intermittent hormone therapy

scientific article published on 09 January 2012

Model predictive control for optimally scheduling intermittent androgen suppression of prostate cancer

scientific article published on 27 March 2014

Modeling Biomolecular Networks in Cells

article

Modeling genetic switches with positive feedback loops.

scientific article

Modeling the obesity epidemic: social contagion and its implications for control

scientific article published on 9 March 2013

Molecular communication through stochastic synchronization induced by extracellular fluctuations.

scientific article published on 19 October 2005

Multivariate analysis of noise in genetic regulatory networks

scientific article published in August 2004

Neural fate decisions mediated by trans-activation and cis-inhibition in Notch signaling

scientific article

Noise-induced cooperative behavior in a multicell system

scientific article published on 17 March 2005

Nonlinear systems identification by combining regression with bootstrap resampling.

scientific article published in December 2011

Nonstandard scaling law of fluctuations in finite-size systems of globally coupled oscillators

scientific article published on 30 August 2013

On global and local critical points of extended contact process on homogeneous trees.

scientific article published on 23 February 2008

On the limits of probabilistic forecasting in nonlinear times series analysis

scientific article published on December 2016

On the use of chance-adjusted agreement statistic to measure the assortative transmission of infectious diseases

article

Optimality model of unsupervised spike-timing-dependent plasticity: synaptic memory and weight distribution

scientific article published in March 2007

Oscillatory hierarchy in a network of leaky integrate-and-fire neurons with short-term plasticity.

scientific article published on 8 July 2013

Parameter Scaling for Epidemic Size in a Spatial Epidemic Model with Mobile Individuals

scientific article

Parameter estimation and optimal scheduling algorithm for a mathematical model of intermittent androgen suppression therapy for prostate cancer

scientific article published in December 2013

Personalizing Androgen Suppression for Prostate Cancer Using Mathematical Modeling

scientific article published on 8 February 2018

Phase transitions in mixed populations composed of two types of self-oscillatory elements with different periods

scientific article published on 3 September 2010

Piecewise affine systems modelling for optimizing hormone therapy of prostate cancer ⬇️

scientific article published on November 13, 2010

Population Code Dynamics in Categorical Perception

scientific article

Possibility of short-term probabilistic forecasts for large earthquakes making good use of the limitations of existing catalogs

scientific article published on 20 October 2016

Possible effects of depolarizing GABAA conductance on the neuronal input-output relationship: a modeling study.

scientific article published on 2 February 2005

Possible neural coding with interevent intervals of synchronous firing

scientific article published on 23 August 2002

Predicted contextual modulation varies with distance from pinwheel centers in the orientation preference map.

scientific article published on 12 October 2011

Predicting disease progression from short biomarker series using expert advice algorithm

scientific article

Probabilistic differential diagnosis of Middle East respiratory syndrome (MERS) using the time from immigration to illness onset among imported cases

scientific article published on 6 January 2014

Prologue--The pioneering work of the late professor Gen Matsumoto

scientific article published in June 2004

Protein classification with imbalanced data

scientific article

Protein domain annotation with integration of heterogeneous information sources

scientific article published on 01 July 2008

Protein domain annotation with predicted domain-domain interaction networks.

scientific article published in January 2008

Protein function prediction with high-throughput data

scientific article

Protein function prediction with the shortest path in functional linkage graph and boosting.

scientific article published in January 2008

QUANTITATIVE MODELING OF SPATIO-TEMPORAL DYNAMICS OF INFERIOR OLIVE NEURONS WITH A SIMPLE CONDUCTANCE-BASED MODEL.

scientific article

Quantification of deaminase activity-dependent and -independent restriction of HIV-1 replication mediated by APOBEC3F and APOBEC3G through experimental-mathematical investigation

scientific article

Quantification of the dynamics of enterovirus 71 infection by experimental-mathematical investigation

scientific article published on 24 October 2012

Quantifying collective attention from tweet stream

scientific article (publication date: 2013)

Quantifying critical states of complex diseases using single-sample dynamic network biomarkers

scientific article

Quantitative mathematical modeling of PSA dynamics of prostate cancer patients treated with intermittent androgen suppression

scientific article

Random and targeted interventions for epidemic control in metapopulation models

scientific article

Real-time investigation of measles epidemics with estimate of vaccine efficacy

scientific article published on 23 April 2012

Reconstructing state spaces from multivariate data using variable delays.

scientific article

Recurrent synaptic input and the timing of gamma-frequency-modulated firing of pyramidal cells during neocortical "UP" states.

scientific article

Relationship between brain network pattern and cognitive performance of children revealed by MEG signals during free viewing of video

scientific article published on 11 February 2014

Rendezvous effects in the diffusion process on bipartite metapopulation networks

scientific article published on 31 October 2011

Reorganization of effective network structure with dynamic synapses in cortical circuit and its possible functions.

scientific article published on 8 July 2013

Representational switching by dynamical reorganization of attractor structure in a network model of the prefrontal cortex

scientific article

Representing spike trains using constant sampling intervals

scientific article published on 5 July 2009

Rewiring-induced chaos in pulse-coupled neural networks

scientific article published on 14 December 2011

Robustness and fragility in coupled oscillator networks under targeted attacks

scientific article published on 17 January 2017

Robustness of oscillatory behavior in correlated networks

scientific article published on 20 April 2015

Roles of inhibitory neurons in rewiring-induced synchronization in pulse-coupled neural networks.

scientific article published in May 2010

Safety-information-driven human mobility patterns with metapopulation epidemic dynamics

scientific article published on 27 November 2012

Selectivity and stability via dendritic nonlinearity

scientific article

Self-organizing dual coding based on spike-time-dependent plasticity.

scientific article published in March 2004

Sensitivity versus resonance in two-dimensional spiking-bursting neuron models.

scientific article published on 3 April 2007

Sequential patterns of spikes and scale-invariance in modular networks

scientific article published on 21 July 2014

Solution to the inverse problem of estimating gap-junctional and inhibitory conductance in inferior olive neurons from spike trains by network model simulation.

scientific article published on 4 February 2013

Spatio-temporal dynamics in collective frog choruses examined by mathematical modeling and field observations.

scientific article

Spatiotemporal spike encoding of a continuous external signal

scientific article

Spike-timing Dependent Plasticity and Mutual Information Maximization for a Spiking Neuron Model ⬇️

article by Taro Toyoizumi et al published 2005 in Advances in Neural Information Processing Systems 17

Spontaneous mode switching in coupled oscillators competing for constant amounts of resources

scientific article published in March 2010

Spontaneous slow oscillations and sequential patterns due to short-term plasticity in a model of the cortex

scientific article

Stability analysis of associative memory network composed of stochastic neurons and dynamic synapses

scientific article published on 21 February 2013

Stochastic resonance of localized activity driven by common noise

scientific article

Stochastic synchronization of genetic oscillator networks

scientific article

Stochastic synchrony of chaos in a pulse-coupled neural network with both chemical and electrical synapses among inhibitory neurons

scientific article

Sudden change from chaos to oscillation death in the Bonhoeffer-van der Pol oscillator under weak periodic perturbation

scientific article published on 10 November 2011

Synchronization and propagation of bursts in networks of coupled map neurons.

scientific article published in March 2006

Synchronization of coupled nonidentical genetic oscillators

scientific article published on 02 February 2006

Synchronization of firing in cortical fast-spiking interneurons at gamma frequencies: a phase-resetting analysis

scientific article

Synchronizing a multicellular system by external input: an artificial control strategy

scientific article published on 11 May 2006

Testing a neural coding hypothesis using surrogate data

scientific article

The Suppression of Beta Oscillations in the Primate Supplementary Motor Complex Reflects a Volatile State During the Updating of Action Sequences

scientific article published in August 2015

The impact of model building on the transmission dynamics under vaccination: observable (symptom-based) versus unobservable (contagiousness-dependent) approaches

scientific article

The role of chaotic resonance in cerebellar learning

scientific article

The time required to estimate the case fatality ratio of influenza using only the tip of an iceberg: joint estimation of the virulence and the transmission potential

scientific article

Theory of hybrid dynamical systems and its applications to biological and medical systems ⬇️

scientific article published on November 13, 2010

Theory of localized synfire chain: characteristic propagation speed of stable spike pattern ⬇️

scientific article published in January 2005

Three-dimensional reconstruction of single-cell chromosome structure using recurrence plots

scientific article

Three-dimensional tori and Arnold tongues.

scientific article published in March 2014

Threshold control of chaotic neural network.

scientific article published on 8 December 2007

Torus-doubling process via strange nonchaotic attractors

Towards dynamical network biomarkers in neuromodulation of episodic migraine

scientific article published on September 2013

Transient resetting: a novel mechanism for synchrony and its biological examples

scientific article

Transmission of severe acute respiratory syndrome in dynamical small-world networks

scientific article published on 31 March 2004

Uncovering signal transduction networks from high-throughput data by integer linear programming

scientific article

Understanding migraine using dynamic network biomarkers

scientific article published on 16 September 2014

Variable timescales of repeated spike patterns in synfire chain with Mexican-hat connectivity

scientific article

Wind direction modelling using multiple observation points

scientific article published on February 2008

β-expansion attractors observed in A/D converters

scientific article published on December 2012

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