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List of works by Cindy H. Nakatsu

A Grape Powder Attenuates Colonic Inflammation, Inhibits Colitis-associated Colorectal Cancer Development and Causes Favorable Changes of Gut Microbiota in Mice (OR04-07-19)

A hidden pitfall in the preparation of agar media undermines microorganism cultivability

scientific article

Ablation of tumor necrosis factor is associated with decreased inflammation and alterations of the microbiota in a mouse model of inflammatory bowel disease.

scientific article

Aciduric Proteobacteria isolated from pH 2.9 soil

scientific article

Aerobic biological treatment of a pharmaceutical wastewater: effect of temperature on cod removal and bacterial community development

scientific article published in December 2001

Age, sex, and TNF associated differences in the gut microbiota of mice and their impact on acute TNBS colitis

scientific article

Analyses of microbial activity in biomass-recycle reactors using denaturing gradient gel electrophoresis of 16S rDNA and 16S rRNA PCR products

scientific article published on 01 April 2002

Analysis of environmental Escherichia coli isolates for virulence genes using the TaqMan PCR system.

scientific article published in January 2003

Are Uncultivated Bacteria Really Uncultivable? ⬇️

scientific article published on October 10, 2012

Assessment of statistical methods used in library-based approaches to microbial source tracking

scientific article published in December 2003

Bacterial Community 16S rRNA Gene Sequencing Characterizes Riverine Microbial Impact on Lake Michigan

article

Bacterial activity, community structure, and centimeter-scale spatial heterogeneity in contaminated soil

scientific article published on 10 February 2006

Bench-scale and field-scale evaluation of catechol 2,3-dioxygenase specific primers for monitoring BTX bioremediation

scientific article published in March 2004

Biotransformation of 8:2 fluorotelomer alcohol in soil and by soil bacteria isolates.

scientific article

Carbon dioxide concentration dictates alternative methanogenic pathways in oil reservoirs.

scientific article

Community dynamics and heterogeneities in mixed bacterial communities subjected to nutrient periodicities

scientific article published in June 2007

Comparative analysis of eight Arthrobacter plasmids

scientific article published on 31 January 2008

Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens

scientific article

Comparison of Yacon (Smallanthus sonchifolius) Tuber with Commercialized Fructo-oligosaccharides (FOS) in Terms of Physiology, Fermentation Products and Intestinal Microbial Communities in Rats

scientific article

Comparison of genotypic-based microbial source tracking methods requiring a host origin database.

scientific article published in December 2003

Comparison of the fecal, cecal, and mucus microbiome in male and female mice after TNBS-induced colitis

scientific article published on 08 November 2019

Complete genome sequence of Arthrobacter sp. strain FB24.

scientific article published on 30 September 2013

Correction: Ablation of tumor necrosis factor is associated with decreased inflammation and alterations of the microbiota in a mouse model of inflammatory bowel disease

scientific article published on 10 April 2015

Cytotoxicity potential and genotypic characterization of Escherichia coli isolates from environmental and food sources

scientific article

Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR.

scientific article

Dietary fat content and fiber type modulate hind gut microbial community and metabolic markers in the pig.

scientific article

Draft Genome Sequence of Pseudomonas fluorescens Strain TR3, a Potential Biocontrol Agent against the Rice Blast Fungus Magnaporthe oryzae

scientific article published on 22 November 2017

Effect of nutrient periodicity on microbial community dynamics

scientific article published on May 2006

Effect of soluble corn fiber supplementation for 1 year on bone metabolism in children, the MetA-bone trial: Rationale and design

scientific article published on 20 June 2020

Effects of dietary resistant starch content on metabolic status, milk composition, and microbial profiling in lactating sows and on offspring performance

scientific article published on 5 February 2016

Enumeration of aromatic oxygenase genes to evaluate biodegradation during multi-phase extraction at a gasoline-contaminated site

scientific article published on 9 July 2008

Enumeration of aromatic oxygenase genes to evaluate monitored natural attenuation at gasoline-contaminated sites

scientific article published on 6 August 2007

Fate of the biological control agent Pseudomonas aureofaciens TX-1 after application to turfgrass

scientific article

Fecal bacterial community changes associated with isoflavone metabolites in postmenopausal women after soy bar consumption

scientific article

Functional and structural adaptations of bacterial communities growing on particulate substrates under stringent nutrient limitation

scientific article published on 29 October 2002

Galacto-oligosaccharides increase calcium absorption and gut bifidobacteria in young girls: a double-blind cross-over trial

scientific article published on 14 March 2013

Galactooligosaccharides improve mineral absorption and bone properties in growing rats through gut fermentation.

scientific article

Global proteomic analysis of the chromate response in Arthrobacter sp. strain FB24.

scientific article published in April 2009

High-level chromate resistance in Arthrobacter sp. strain FB24 requires previously uncharacterized accessory genes

scientific article published on 16 September 2009

Increase in Bacterial Colony Formation from a Permafrost Ice Wedge Dosed with a Tomitella biformata Recombinant Resuscitation-Promoting Factor Protein.

scientific article published on 4 April 2015

Influence of Filter Pore Size on Composition and Relative Abundance of Bacterial Communities and Select Host-Specific MST Markers in Coastal Waters of Southern Lake Michigan

scientific article published in 2021

Inhibition of nitrate reduction by chromium (VI) in anaerobic soil microcosms

scientific article

Interaction of bacterial communities and indicators of water quality in shoreline sand, sediment, and water of Lake Michigan

scientific article published on 02 March 2020

Investigation of carryover effect of prior fibre consumption on growth, serum and tissue metabolic markers in Ossabaw pigs fed a high-fat diet.

scientific article published on 14 April 2018

Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria

scientific article

Microbial Ecology along the Gastrointestinal Tract

scientific article published on 10 November 2017

Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbons

scientific article published on 10 February 2006

Microbial community dynamics in nutrient-pulsed chemostats

scientific article published in July 2006

Molecular analysis of bacterial community based on 16S rDNA and functional genes in activated sludge enriched with 2,4-dichlorophenoxyacetic acid (2,4-D) under different cultural conditions

scientific article

Optimization of MALDI-TOF MS for strain level differentiation of Arthrobacter isolates

scientific article published on 2 March 2006

Optimization of RNA extraction for PCR quantification of aromatic compound degradation genes.

scientific article

Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater

scientific article

Phylogenetically Novel LuxI/LuxR-Type Quorum Sensing Systems Isolated Using a Metagenomic Approach ⬇️

scientific article published on September 14, 2012

Plant-soil interactions regulate the identity of soil carbon in invaded ecosystems: implication for legacy effects

article

Quantification of aromatic oxygenase genes to evaluate enhanced bioremediation by oxygen releasing materials at a gasoline-contaminated site

scientific article

Rationale and study design of Randomized Controlled Trial of Dietary Supplementation with prune (dried plums) on bone density, geometry, and estimated bone strength in postmenopausal women: The Prune study

scientific article published in 2022

Regulation of host phenotypic plasticity by gut symbiont communities in the eastern subterranean termite (Reticulitermes flavipes)

scientific article published in 2021

Responses of the anaerobic bacterial community to addition of organic C in chromium(VI)- and iron(III)-amended microcosms

scientific article

Resuscitation promoting factor (Rpf) from Tomitella biformata AHU 1821(T) promotes growth and resuscitates non-dividing cells.

scientific article

Skeletal protection and promotion of microbiome diversity by dietary boosting of the endogenous antioxidant response

scientific article published on 14 December 2020

Soil microbial community responses to additions of organic carbon substrates and heavy metals (Pb and Cr).

scientific article

Soluble Corn Fiber Increases Calcium Absorption Associated with Shifts in the Gut Microbiome: A Randomized Dose-Response Trial in Free-Living Pubertal Females.

scientific article published on 8 June 2016

Soluble maize fibre affects short-term calcium absorption in adolescent boys and girls: a randomised controlled trial using dual stable isotopic tracers

scientific article

Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE.

scientific article published in February 2002

Subtyping of foodborne and environmental isolates of Escherichia coli by multiplex-PCR, rep-PCR, PFGE, ribotyping and AFLP.

scientific article published in June 2003

Supplementation of polyphenol-rich grapes attenuates colitis, colitis-associated colon cancer, and disease-associated dysbiosis in mice, but fails to mitigate colitis in antibiotic-treated mice

scientific article published in 2022

Surface enhanced Raman spectroscopy (SERS) for the discrimination of Arthrobacter strains based on variations in cell surface composition.

scientific article published on 30 July 2012

The Intersection of TNF, IBD and the Microbiome

scientific article

Thermophilic aerobic treatment of a synthetic wastewater in a membrane-coupled bioreactor

scientific article published in April 2001

Utilization of multiple microbial tools to evaluate efficacy of restoration strategies to improve recreational water quality at a Lake Michigan Beach (Racine, WI)

scientific article published on 03 September 2020

Variable selection in high-dimensional multivariate binary data with application to the analysis of microbial community DNA fingerprints

scientific article

Vitamin E alpha- and gamma-tocopherol mitigate colitis, protect intestinal barrier function and modulate the gut microbiota in mice

scientific article published on 19 December 2020

Vitamin E delta-tocotrienol and metabolite 13'-carboxychromanol inhibit colitis-associated colon tumorigenesis and modulate gut microbiota in mice: Tocotrienol and 13'-carboxychromanol modulate gut microbiota

scientific article published on 18 December 2020

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