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List of works by Shaoliang Peng

A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer

scientific article published on 16 June 2017

A Hybrid Parallel Strategy Based on String Graph Theory to Improve De Novo DNA Assembly on the TianHe-2 Supercomputer

scientific article

A Massively Parallel Computational Method of Reading Index Files for SOAPsnv

scientific article published on 7 September 2015

A Radiomics Signature to Quantitatively Analyze COVID-19-Infected Pulmonary Lesions

scientific article published on 07 January 2021

A-CaMP: a tool for anti-cancer and antimicrobial peptide generation

scientific article published on 06 January 2020

An Efficient Double-Layer Blockchain Method for Vaccine Production Supervision

scientific article published on 01 July 2020

B-MIC: An Ultrafast Three-Level Parallel Sequence Aligner Using MIC.

scientific article published on 10 September 2015

Bioinformatics applications on Apache Spark

scientific article published on 01 August 2018

COPCOP: A Novel Algorithm and Parallel Optimization Framework for Co-Evolutionary Domain Detection

scientific article published on 30 October 2018

CRISP-view: a database of functional genetic screens spanning multiple phenotypes

scientific article published on 03 October 2020

Correction: SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner.

scientific article published on 22 August 2013

Cotton D genome assemblies built with long-read data unveil mechanisms of centromere evolution and stress tolerance divergence

scientific article published on 03 June 2021

DMCM: a Data-adaptive Mutation Clustering Method to identify cancer-related mutation clusters

scientific article published on 01 February 2019

Deep learning in omics: a survey and guideline

scientific article published on 01 February 2019

Discriminant Projection Shared Dictionary Learning for Classification of Tumors Using Gene Expression Data

scientific article published on 29 October 2019

Distinct Subtypes of Gastric Cancer Defined by Molecular Characterization Include Novel Mutational Signatures with Prognostic Capability

scientific article published on 8 February 2016

Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture

scholarly article by Shaoliang Peng published in August 2018

Erratum: Corrigendum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax

scientific article published in Nature Communications

Erratum: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

scientific article published on 8 July 2015

Exploring Voluntary Vaccinating Behaviors using Evolutionary N-person Threshold Games

scientific article published on 27 November 2017

Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax.

scientific article published on 3 June 2014

Guide Positioning Sequencing identifies aberrant DNA methylation patterns that alter cell identity and tumor-immune surveillance networks

scientific article published on 22 January 2019

High-scalable Collaborated Parallel Framework for Large-scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer

scientific article published on 13 February 2018

LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs

scientific article published on 01 January 2019

LUNAR :Drug Screening for Novel Coronavirus Based on Representation Learning Graph Convolutional Network

scientific article published on 03 June 2021

MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).

scientific article published on 23 April 2015

Mapping central α-helix linker mediated conformational transition pathway of calmodulin via simple computational approach

scientific article published on 05 August 2014

MicroRNAs activate gene transcription epigenetically as an enhancer trigger

scientific article published on 6 February 2016

MinimapR: A parallel alignment tool for the analysis of large-scale third-generation sequencing data

scientific article published on 13 July 2022

Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework

scientific article published on 8 November 2017

OffScan: a universal and fast CRISPR off-target sites detection tool

scientific article published on 05 March 2020

P-Hint-Hunt: a deep parallelized whole genome DNA methylation detection tool

scientific article

Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters

scientific article

Parallelization of Molecular Docking: A Review

scientific article published on 01 January 2018

Report-Concept Textual-Prompt Learning for Enhancing X-ray Diagnosis

scientific article published on 26 October 2024

Review of CRISPR/Cas9 sgRNA Design Tools

scientific article published on 11 April 2018

SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner

scientific article (publication date: 2013)

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data

scientific article

SenCast: Scalable multicast in wireless sensor networks

Special issue on Computational Resources and Methods in Biological Sciences.

scientific article published in July 2018

The Integrative Method Based on the Module-Network for Identifying Driver Genes in Cancer Subtypes.

scientific article

VCSRA: A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism

scientific article published on 17 July 2018

VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments

scientific article published on 24 June 2021

Whole-Genome Sequencing Reveals Diverse Models of Structural Variations in Esophageal Squamous Cell Carcinoma

scientific article published on 27 January 2016

cmFSM: a scalable CPU-MIC coordinated drug-finding tool by frequent subgraph mining.

scientific article

paraGSEA: a scalable approach for large-scale gene expression profiling

scientific article published on September 2017

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