List of works - Karthik Shekhar

A single-cell survey of the small intestinal epithelium

scientific article published on 8 November 2017

Automatic Classification of Cellular Expression by Nonlinear Stochastic Embedding (ACCENSE).

scientific article published on 16 December 2013

Cell Atlas of The Human Fovea and Peripheral Retina

scientific article published on 17 June 2020

Cell atlas of aqueous humor outflow pathways in eyes of humans and four model species provides insight into glaucoma pathogenesis

scientific article published on 27 April 2020

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

scientific article published on August 2016

Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq

scientific article published on 9 March 2018

Continuous immunotypes describe human immune variation and predict diverse responses

scientific article published on 10 July 2017

Coordinate linkage of HIV evolution reveals regions of immunological vulnerability

scientific article

Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing

scientific article

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

scientific article

Hydrophobic CDR3 residues promote the development of self-reactive T cells

scientific article published on 27 June 2016

Identification of Cell Types from Single-Cell Transcriptomic Data

scientific article published on 01 January 2019

Magnitude and Kinetics of CD8+ T Cell Activation during Hyperacute HIV Infection Impact Viral Set Point

scientific article published on 5 September 2015

Massively parallel single-nucleus RNA-seq with DroNc-seq

scientific article published on 28 August 2017

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

scientific article published on 31 January 2019

Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior

scientific article published on 15 December 2020

Molecular, spatial and functional single-cell profiling of the hypothalamic preoptic region

scientific article published in Science

Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes

scientific article published on 26 November 2019

Single-Cell RNA Sequencing of Human T Cells

scientific article

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

scientific article

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

scientific article

Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes

scientific article

Statistical linkage analysis of substitutions in patient-derived sequences of genotype 1a hepatitis C virus nonstructural protein 3 exposes targets for immunogen design

scientific article

T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation

scientific article published on 01 November 2018

Therapeutic efficacy of potent neutralizing HIV-1-specific monoclonal antibodies in SHIV-infected rhesus monkeys

scientific article

List of works by Karthik Shekhar

A single-cell survey of the small intestinal epithelium

Automatic Classification of Cellular Expression by Nonlinear Stochastic Embedding (ACCENSE).

Cell Atlas of The Human Fovea and Peripheral Retina

Cell atlas of aqueous humor outflow pathways in eyes of humans and four model species provides insight into glaucoma pathogenesis

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq

Continuous immunotypes describe human immune variation and predict diverse responses

Coordinate linkage of HIV evolution reveals regions of immunological vulnerability

Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

Hydrophobic CDR3 residues promote the development of self-reactive T cells

Identification of Cell Types from Single-Cell Transcriptomic Data

Magnitude and Kinetics of CD8+ T Cell Activation during Hyperacute HIV Infection Impact Viral Set Point

Massively parallel single-nucleus RNA-seq with DroNc-seq

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior

Molecular, spatial and functional single-cell profiling of the hypothalamic preoptic region

Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes

Single-Cell RNA Sequencing of Human T Cells

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes

Statistical linkage analysis of substitutions in patient-derived sequences of genotype 1a hepatitis C virus nonstructural protein 3 exposes targets for immunogen design

T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation

Therapeutic efficacy of potent neutralizing HIV-1-specific monoclonal antibodies in SHIV-infected rhesus monkeys