List of works by Shawn N. Murphy

A mega-analysis of genome-wide association studies for major depressive disorder

scientific article

A translational engine at the national scale: informatics for integrating biology and the bedside

scientific article published on 10 November 2011

An electronic health records study of long-term weight gain following antidepressant use.

scientific article

Antidepressant response in patients with major depression exposed to NSAIDs: a pharmacovigilance study

scientific article published on October 2012

Apps to display patient data, making SMART available in the i2b2 platform.

scientific article

Architecture of the open-source clinical research chart from Informatics for Integrating Biology and the Bedside.

scientific article published on 11 October 2007

Association between low density lipoprotein and rheumatoid arthritis genetic factors with low density lipoprotein levels in rheumatoid arthritis and non-rheumatoid arthritis controls

scientific article published on 28 May 2013

Association between reduced plasma 25-hydroxy vitamin D and increased risk of cancer in patients with inflammatory bowel diseases

scientific article published on 23 October 2013

Associations of autoantibodies, autoimmune risk alleles, and clinical diagnoses from the electronic medical records in rheumatoid arthritis cases and non-rheumatoid arthritis controls

scientific article published on March 2013

Colonoscopy is associated with a reduced risk for colon cancer and mortality in patients with inflammatory bowel diseases

scientific article

Combining clinical and genomics queries using i2b2 - Three methods

scientific article

Common Genetic Variants Influence Circulating Vitamin D Levels in Inflammatory Bowel Diseases

scientific article

Comparative Effectiveness of Infliximab and Adalimumab in Crohn's Disease and Ulcerative Colitis

scientific article published on March 2016

Development of phenotype algorithms using electronic medical records and incorporating natural language processing

scientific article

Electronic medical records for discovery research in rheumatoid arthritis

scientific article

Enabling phenotypic big data with PheNorm.

scientific article published on 3 November 2017

Feasibility of studying brain morphology in major depressive disorder with structural magnetic resonance imaging and clinical data from the electronic medical record: a pilot study

scientific article

Genetic basis of autoantibody positive and negative rheumatoid arthritis risk in a multi-ethnic cohort derived from electronic health records

scientific article

Identification of Nonresponse to Treatment Using Narrative Data in an Electronic Health Record Inflammatory Bowel Disease Cohort

scientific article

Improving case definition of Crohn's disease and ulcerative colitis in electronic medical records using natural language processing: a novel informatics approach

scientific article published on June 2013

Improving the power of genetic association tests with imperfect phenotype derived from electronic medical records

scientific article

Incident user cohort study of risk for gastrointestinal bleed and stroke in individuals with major depressive disorder treated with antidepressants

scientific article published on 30 March 2012

Instrumenting the health care enterprise for discovery research in the genomic era.

scientific article published on 14 July 2009

Integration of clinical and genetic data in the i2b2 architecture.

scientific article

International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study

scientific article published on 11 October 2021

International Electronic Health Record-Derived COVID-19 Clinical Course Profiles: The 4CE Consortium

scientific article published on 18 April 2020

International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality

scientific article published on 13 June 2022

International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium

scientific article published on 19 August 2020

Limbic system white matter microstructure and long-term treatment outcome in major depressive disorder: a diffusion tensor imaging study using legacy data

scientific article published on 30 April 2012

Lipid and lipoprotein levels and trend in rheumatoid arthritis compared to the general population

scientific article

Mapping tool for maintaining vocabulary relationships.

scientific article published on January 2006

Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts

scientific article published on 24 August 2015

Mode of childbirth and long-term outcomes in women with inflammatory bowel diseases

scientific article

Modeling disease severity in multiple sclerosis using electronic health records

scientific article

Mortality and extraintestinal cancers in patients with primary sclerosing cholangitis and inflammatory bowel disease

scientific article

Normalization of plasma 25-hydroxy vitamin D is associated with reduced risk of surgery in Crohn's disease

scientific article published on August 2013

QT interval and antidepressant use: a cross sectional study of electronic health records

scientific article

Rapid identification of myocardial infarction risk associated with diabetes medications using electronic medical records

scientific article

Rare copy number variation in treatment-resistant major depressive disorder

scientific article

SHRINE: enabling nationally scalable multi-site disease studies

scientific article

Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): architecture

scientific article

Serum inflammatory markers and risk of colorectal cancer in patients with inflammatory bowel diseases

scientific article

Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).

scientific article

Similar risk of depression and anxiety following surgery or hospitalization for Crohn's disease and ulcerative colitis

scientific article published on 22 January 2013

Statin Use Is Associated With Reduced Risk of Colorectal Cancer in Patients With Inflammatory Bowel Diseases

scientific article published on 20 February 2016

Strategies for maintaining patient privacy in i2b2.

scientific article published on 7 October 2011

Stratification of risk for hospital admissions for injury related to fall: cohort study

scientific article

Surrogate-assisted feature extraction for high-throughput phenotyping

scientific article

TYK2 protein-coding variants protect against rheumatoid arthritis and autoimmunity, with no evidence of major pleiotropic effects on non-autoimmune complex traits

scientific article

The SMART Platform: early experience enabling substitutable applications for electronic health records

scientific article

The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories

scientific article

The co-morbidity burden of children and young adults with autism spectrum disorders

scientific article

Thromboprophylaxis is associated with reduced post-hospitalization venous thromboembolic events in patients with inflammatory bowel diseases

scientific article

Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources

scientific article

Validation of electronic health record phenotyping of bipolar disorder cases and controls

scientific article published on 12 December 2014

iTools: a framework for classification, categorization and integration of computational biology resources

scientific article published in 2008

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