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List of works by Daniel R. Salomon

A genome-wide survey of mutations in the Jurkat cell line.

scientific article published on 8 May 2018

A structurally distinct human mycoplasma protein that generically blocks antigen-antibody union

scientific article

AJT's response to the National Institutes of Health public access regulations

scientific article published on 22 August 2008

Activation of counter-regulatory mechanisms in a rat renal acute rejection model

scientific article

An association of candidate gene haplotypes and bleeding severity in von Willebrand disease (VWD) type 1 pedigrees

scientific article published on 29 June 2004

Application of microdroplet PCR for large-scale targeted bisulfite sequencing.

scientific article

Applying genomics to organ transplantation medicine in both discovery and validation of biomarkers.

scientific article published on 09 August 2007

Association study of long-term kidney transplant rejection using whole-exome sequencing

Biomarker Guidelines for High-Dimensional Genomic Studies in Transplantation: Adding Method to the Madness

scientific article

Biomarkers for early and late stage chronic allograft nephropathy by proteogenomic profiling of peripheral blood

scientific article

CD81 expressed on human thymocytes mediates integrin activation and interleukin 2-dependent proliferation

scientific article

Cell adhesion and migration are regulated at distinct stages of thymic T cell development: the roles of fibronectin, VLA4, and VLA5.

scientific article

Changes in Urinary Microbiome Populations Correlate in Kidney Transplants With Interstitial Fibrosis and Tubular Atrophy Documented in Early Surveillance Biopsies.

scientific article published on 6 September 2016

Clinical and plasma proteomic markers correlating with chronic kidney disease after liver transplantation

scientific article

Comparative top down proteomics of peripheral blood mononuclear cells from kidney transplant recipients with normal kidney biopsies or acute rejection.

scientific article published on 27 April 2016

Comparison of the convergent receptor utilization of a retargeted feline leukemia virus envelope with a naturally-occurring porcine endogenous retrovirus A.

scientific article

Convergent Functional Genomics of bipolar disorder: from animal model pharmacogenomics to human genetics and biomarkers.

scientific article published on 3 June 2007

Convergent functional genomics of schizophrenia: from comprehensive understanding to genetic risk prediction.

scientific article

Correction: Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality

scientific article published on 30 December 2016

Cyclosporin-A induced toxicity in rat renal collecting duct cells: interference with enhanced hypertonicity induced apoptosis

scientific article published on January 2010

De novo kidney transplantation without use of calcineurin inhibitors preserves renal structure and function at two years.

scientific article published in November 2004

Deconvoluting post-transplant immunity: cell subset-specific mapping reveals pathways for activation and expansion of memory T, monocytes and B cells

scientific article (publication date: 14 October 2010)

Defining CD4 T cell memory by the epigenetic landscape of CpG DNA methylation

scientific article

Development and clinical validity of a novel blood-based molecular biomarker for subclinical acute rejection following kidney transplant

scientific article published in January 2019

Discovery and cross-validation of peripheral blood and renal biopsy gene expression signatures from ethnically diverse kidney transplant populations

scientific article published on 08 July 2019

Discovery and validation of blood biomarkers for suicidality

scientific article

Ectopic B-cell clusters that infiltrate transplanted human kidneys are clonal

scientific article

Erratum: Identifying blood biomarkers for mood disorders using convergent functional genomics

scholarly article published in Molecular Psychiatry

Expression and function of alpha(v)beta(3) and alpha(v)beta(5) integrins in the developing pancreas: roles in the adhesion and migration of putative endocrine progenitor cells

scientific article

Expression of the miR-150 tumor suppressor is restored by and synergizes with rapamycin in a human leukemia T-cell line

scientific article published on 22 September 2018

Finding the active genes in deep RNA-seq gene expression studies

scientific article

Functional hierarchy of two L domains in porcine endogenous retrovirus (PERV) that influence release and infectivity

scientific article

Gene Expression in Biopsies of Acute Rejection and Interstitial Fibrosis/Tubular Atrophy Reveals Highly Shared Mechanisms That Correlate With Worse Long-Term Outcomes.

scientific article

Gene expression signature predicts human islet integrity and transplant functionality in diabetic mice

scientific article published on 2 October 2017

Genetics of platelet reactivity in normal, healthy individuals

scientific article published on 9 September 2009

Genome-wide analysis of immune activation in human T and B cells reveals distinct classes of alternatively spliced genes

scientific article

Genome-wide expression profiling in the peripheral blood of patients with fibromyalgia

scientific article published on 12 February 2016

Genomic Biomarkers Correlate with HLA-Identical Renal Transplant Tolerance ⬇️

scientific article published on June 20, 2013

Genomic meta-analysis of growth factor and integrin pathways in chronic kidney transplant injury

scientific article

Genomic profiles and predictors of early allograft dysfunction after human liver transplantation.

scientific article published on 31 March 2015

H3K27 Methylation Dynamics during CD4 T Cell Activation: Regulation of JAK/STAT and IL12RB2 Expression by JMJD3. ⬇️

scientific article

HLA identical non-chimeric and HLA disparate chimeric renal transplant tolerance

scientific article

Heat shock protein 70 is required for optimal liver regeneration after partial hepatectomy in mice

scientific article published on March 2014

Hematopoietic stem cell gene therapy for the multisystemic lysosomal storage disorder cystinosis

scientific article published on 23 October 2012

Identification of a Thymic Epithelial Cell Subset Sharing Expression of the Class Ib HLA-G Molecule with Fetal Trophoblasts ⬇️

scientific article published on July 21, 1997

Identification of blood biomarkers for psychosis using convergent functional genomics.

scientific article published on 24 November 2009

Identification of residues outside of the receptor binding domain that influence the infectivity and tropism of porcine endogenous retrovirus

scientific article published on 28 May 2008

Identification of two distinct structural regions in a human porcine endogenous retrovirus receptor, HuPAR2, contributing to function for viral entry

scientific article

Identifying blood biomarkers for mood disorders using convergent functional genomics

scientific article published on 26 February 2008

Intragraft TNF receptor signaling contributes to activation of innate and adaptive immunity in a renal allograft model

scientific article

Isolation and Angiogenesis by Endothelial Progenitors in the Fetal Liver

scientific article published on 11 August 2005

Kidney Transplantation With Sirolimus and Mycophenolate Mofetil???Based Immunosuppression: 5-Year Results of a Randomized Prospective Trial Compared to Calcineurin Inhibitor Drugs

scientific article published in April 2007

Kidney preservation by bone marrow cell transplantation in hereditary nephropathy.

scientific article published on 19 January 2011

Kidney transplant rejection and tissue injury by gene profiling of biopsies and peripheral blood lymphocytes

scientific article

Laparoscopic Donor Nephrectomy Gene Expression Profiling Reveals Upregulation of Stress and Ischemia Associated Genes Compared to Control Kidneys

scientific article published in October 2005

Lentiviral gene delivery of vMIP-II to transplanted endothelial cells and endothelial progenitors is proangiogenic in vivo

scientific article

Library construction for next-generation sequencing: overviews and challenges

scientific article

Method for improved Illumina sequencing library preparation using NuGEN Ovation RNA-Seq System.

scientific article

Mice Transgenic for a Human Porcine Endogenous Retrovirus Receptor Are Susceptible to Productive Viral Infection

Mice transgenic for a human porcine endogenous retrovirus receptor are susceptible to productive viral infection

scientific article

MicroRNA regulation of molecular networks mapped by global microRNA, mRNA, and protein expression in activated T lymphocytes

scientific article

Microdroplet PCR for Highly Multiplexed Targeted Bisulfite Sequencing

scientific article published in January 2018

Mindscape: a convergent perspective on life, mind, consciousness and happiness

scientific article published on June 2010

Molecular classifiers for acute kidney transplant rejection in peripheral blood by whole genome gene expression profiling.

scientific article published on 11 April 2014

Molecular mechanisms of chronic kidney transplant rejection via large-scale proteogenomic analysis of tissue biopsies.

scientific article

Mood, stress and longevity: convergence on ANK3.

scientific article published on 24 May 2016

Multicenter clinical sample collection for microarray analysis

scientific article published on 01 January 2010

New opportunities for organ transplantation research: epigenetics is likely to be an important determinant of the host immune response

scientific article published in June 2013

Nonchimeric HLA-Identical Renal Transplant Tolerance: Regulatory Immunophenotypic/Genomic Biomarkers

scientific article

Orthogonal Comparison of Molecular Signatures of Kidney Transplants With Subclinical and Clinical Acute Rejection: Equivalent Performance Is Agnostic to Both Technology and Platform.

scientific article published on 11 February 2017

Outcomes and native renal recovery following simultaneous liver-kidney transplantation

scientific article published on 3 July 2012

Peripheral Blood Cell Gene Expression Diagnostic for Identifying Symptomatic Transthyretin Amyloidosis Patients: Male and Female Specific Signatures.

scientific article published on 18 July 2016

PhenoChipping of psychotic disorders: a novel approach for deconstructing and quantitating psychiatric phenotypes

scientific article published on 01 September 2006

Plasma protein biomarkers enhance the clinical prediction of kidney injury recovery in patients undergoing liver transplantation

scientific article published on 29 October 2014

Platelet receptor structures and polymorphisms

scientific article

Porcine endogenous retrovirus infects but does not replicate in nonhuman primate primary cells and cell lines

scientific article published on November 2002

Precision medicine for suicidality: from universality to subtypes and personalization.

scientific article published on 15 August 2017

Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells

scientific article published on 12 May 2016

Pseudotyping of porcine endogenous retrovirus by xenotropic murine leukemia virus in a pig islet xenotransplantation model

scientific article

Psychiatric blood biomarkers: avoiding jumping to premature negative or positive conclusions.

scientific article

Quantitative bias in Illumina TruSeq and a novel post amplification barcoding strategy for multiplexed DNA and small RNA deep sequencing

scientific article

RNA Purification and Expression Analysis Using Microarrays and RNA Deep Sequencing ⬇️

scientific article published on January 1, 2013

Strategies for aggregating gene expression data: the collapseRows R function

scientific article

Successful treatment of the murine model of cystinosis using bone marrow cell transplantation.

scientific article

Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality

scientific article published on December 2015

Systemic immunoregulatory and proteogenomic effects of tacrolimus to sirolimus conversion in liver transplant recipients

scientific article published on 17 July 2012

The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells

scientific article published on 7 December 2015

The class I HLA repertoire of pancreatic islets comprises the nonclassical class Ib antigen HLA-G.

scientific article

The costimulatory immunogen LPS induces the B-Cell clones that infiltrate transplanted human kidneys

scientific article published on 6 April 2012

The infectivity and host range of the ecotropic porcine endogenous retrovirus, PERV-C, is modulated by residues in the C-terminal region of its surface envelope protein

scientific article published on 23 November 2005

The role of angiopoietins in the development of endothelial cells from cord blood CD34+ progenitors

scientific article published on 22 June 2004

Towards understanding and predicting suicidality in women: biomarkers and clinical risk assessment

scientific article

Transplant-induced reactivation of murine cytomegalovirus immediate early gene expression is associated with recruitment of NF-κB and AP-1 to the major immediate early promoter.

scientific article published on 20 January 2016

Transplanting Kidneys from Deceased Donors With Severe Acute Kidney Injury

scientific article published on 24 March 2015

UHM-ULM interactions in the RBM39-U2AF65 splicing-factor complex

scientific article published on 24 March 2016

Understanding and predicting suicidality using a combined genomic and clinical risk assessment approach

scientific article published on 18 August 2015

Unique early gene expression patterns in human adult-to-adult living donor liver grafts compared to deceased donor grafts

scientific article published on April 2009

Whole genome transcript profiling from fingerstick blood samples: a comparison and feasibility study

scientific article published on 17 December 2009

Why are some amyloidoses systemic? Does hepatic “chaperoning at a distance” prevent cardiac deposition in a transgenic model of human senile systemic (transthyretin) amyloidosis? ⬇️

scientific article published on February 23, 2012

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