List of works - Sacha Lucchini

A global view of Staphylococcus aureus whole genome expression upon internalization in human epithelial cells

scientific article

A short-oligonucleotide microarray that allows improved detection of gastrointestinal tract microbial communities.

scientific article

ArrayOme: a program for estimating the sizes of microarray-visualized bacterial genomes

scientific article

BABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets.

scientific article

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

scientific article

Comparative genomic indexing reveals the phylogenomics of Escherichia coli pathogens.

scientific article published on August 2003

Comparative genomics of phages and prophages in lactic acid bacteria

scientific article

Correction: H-NS Mediates the Silencing of Laterally Acquired Genes in Bacteria.

scientific article

DNA adenine methylation regulates virulence gene expression in Salmonella enterica serovar Typhimurium.

scientific article

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

scientific article

Direct and indirect control of Lrp on LEE pathogenicity genes of Citrobacter rodentium

scientific article

Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism

scientific article

H-NS mediates the silencing of laterally acquired genes in bacteria

scientific journal article

Lag phase is a distinct growth phase that prepares bacteria for exponential growth and involves transient metal accumulation.

scientific article

Novel phenotypes of Escherichia coli tat mutants revealed by global gene expression and phenotypic analysis

scientific article

Nucleoid-associated protein HU controls three regulons that coordinate virulence, response to stress and general physiology in Salmonella enterica serovar Typhimurium

scientific article published on 6 January 2011

Phylogenetic distribution of traits associated with plant colonization in Escherichia coli

scientific article

Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica.

scientific article

SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

scientific article

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

scientific article

Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

scientific article

The H-NS-like protein StpA represses the RpoS (sigma 38) regulon during exponential growth of Salmonella Typhimurium.

scientific article published on 19 October 2009

The bacterial signal molecule, ppGpp, mediates the environmental regulation of both the invasion and intracellular virulence gene programs of Salmonella

scientific article published on 11 August 2006

The integration host factor (IHF) integrates stationary-phase and virulence gene expression in Salmonella enterica serovar Typhimurium.

scientific article published on March 2006

The leucine-responsive regulatory protein, Lrp, activates transcription of the fim operon in Salmonella enterica serovar typhimurium via the fimZ regulatory gene.

scientific article

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

scientific article

The transcriptional programme of Salmonella enterica serovar Typhimurium reveals a key role for tryptophan metabolism in biofilms.

scientific article

Transcriptional adaptation of Shigella flexneri during infection of macrophages and epithelial cells: insights into the strategies of a cytosolic bacterial pathogen

scientific article

Transcriptomic analysis of Escherichia coli O157:H7 and K-12 cultures exposed to inorganic and organic acids in stationary phase reveals acidulant- and strain-specific acid tolerance responses

scientific article

Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica

scientific article published in January 2003

Variation in siderophore biosynthetic gene distribution and production across environmental and faecal populations of Escherichia coli

scientific article

List of works by Sacha Lucchini

A global view of Staphylococcus aureus whole genome expression upon internalization in human epithelial cells

A short-oligonucleotide microarray that allows improved detection of gastrointestinal tract microbial communities.

ArrayOme: a program for estimating the sizes of microarray-visualized bacterial genomes

BABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets.

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

Comparative genomic indexing reveals the phylogenomics of Escherichia coli pathogens.

Comparative genomics of phages and prophages in lactic acid bacteria

Correction: H-NS Mediates the Silencing of Laterally Acquired Genes in Bacteria.

DNA adenine methylation regulates virulence gene expression in Salmonella enterica serovar Typhimurium.

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

Direct and indirect control of Lrp on LEE pathogenicity genes of Citrobacter rodentium

Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism

H-NS mediates the silencing of laterally acquired genes in bacteria

Lag phase is a distinct growth phase that prepares bacteria for exponential growth and involves transient metal accumulation.

Novel phenotypes of Escherichia coli tat mutants revealed by global gene expression and phenotypic analysis

Nucleoid-associated protein HU controls three regulons that coordinate virulence, response to stress and general physiology in Salmonella enterica serovar Typhimurium

Phylogenetic distribution of traits associated with plant colonization in Escherichia coli

Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica.

SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

The H-NS-like protein StpA represses the RpoS (sigma 38) regulon during exponential growth of Salmonella Typhimurium.

The bacterial signal molecule, ppGpp, mediates the environmental regulation of both the invasion and intracellular virulence gene programs of Salmonella

The integration host factor (IHF) integrates stationary-phase and virulence gene expression in Salmonella enterica serovar Typhimurium.

The leucine-responsive regulatory protein, Lrp, activates transcription of the fim operon in Salmonella enterica serovar typhimurium via the fimZ regulatory gene.

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

The transcriptional programme of Salmonella enterica serovar Typhimurium reveals a key role for tryptophan metabolism in biofilms.

Transcriptional adaptation of Shigella flexneri during infection of macrophages and epithelial cells: insights into the strategies of a cytosolic bacterial pathogen

Transcriptomic analysis of Escherichia coli O157:H7 and K-12 cultures exposed to inorganic and organic acids in stationary phase reveals acidulant- and strain-specific acid tolerance responses

Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica

Variation in siderophore biosynthetic gene distribution and production across environmental and faecal populations of Escherichia coli