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List of works by Cornelis W. A. Pleij

3-D graphics modelling of the tRNA-like 3'-end of turnip yellow mosaic virus RNA: structural and functional implications

scientific article published on April 1987

A functional role for the conserved protonatable hairpins in the 5' untranslated region of turnip yellow mosaic virus RNA

scientific article published on November 1, 1997

A pH-jump approach for investigating secondary structure refolding kinetics in RNA.

scientific article published on July 2002

Acetylation of ribosomal protein S5 affected by defects in the central pseudoknot in 16S ribosomal RNA?

scientific article

An APL-programmed genetic algorithm for the prediction of RNA secondary structure

scientific article

An approximation of loop free energy values of RNA H-pseudoknots

scientific article published in May 1999

Analysis of the RNA of Potato yellow vein virus: evidence for a tripartite genome and conserved 3'-terminal structures among members of the genus Crinivirus

scientific article

Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshift signal: loop lengths and stability of the stem regions

scientific article published on April 1, 1995

Base complementarity in helix 2 of the central pseudoknot in 16S rRNA is essential for ribosome functioning

scientific article published on January 15, 1998

Complete genome sequence of Montana Myotis leukoencephalitis virus, phylogenetic analysis and comparative study of the 3' untranslated region of flaviviruses with no known vector

scientific article published in August 2002

Conservation of RNA structures enables TNV and BYDV 5' and 3' elements to cooperate synergistically in cap-independent translation

scientific article

Crystal structure of an empty capsid of turnip yellow mosaic virus

scientific article published in August 2004

Differential response to frameshift signals in eukaryotic and prokaryotic translational systems

scientific article published on February 11, 1993

Dynamic competition between alternative structures in viroid RNAs simulated by an RNA folding algorithm

scientific article published on February 13, 1998

Elongation factor Tu3 (EF-Tu3) from the kirromycin producer Streptomyces ramocissimus Is resistant to three classes of EF-Tu-specific inhibitors

scientific article published on 2 March 2007

Entrapping ribosomes for viral translation: tRNA mimicry as a molecular Trojan horse

scientific article published in January 2003

Five pseudoknots are present at the 204 nucleotides long 3' noncoding region of tobacco mosaic virus RNA.

scientific article

Functional analysis of the SRV-1 RNA frameshifting pseudoknot.

scientific article published on 17 July 2010

Functional evidence for D- and T-loop interactions in tmRNA.

scientific article published in March 2002

In vivo dynamics of intracistronic transcriptional polarity.

scientific article

Interaction of RNase P from Escherichia coli with pseudoknotted structures in viral RNAs

scientific article published on June 1990

Intracistronic transcriptional polarity enhances translational repression: a new role for Rho.

scientific article

Kissing of the two predominant hairpin loops in the coxsackie B virus 3' untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis

scientific article

Mapping sequences required for productive replication of beet necrotic yellow vein virus RNA 3.

scientific article

Metastable structures and refolding kinetics in hok mRNA of plasmid R1

scientific article

Methylation of the conserved A1518-A1519 in Escherichia coli 16S ribosomal RNA by the ksgA methyltransferase is influenced by methylations around the similarly conserved U1512.G1523 base pair in the 3' terminal hairpin

scientific article

Molecular characterisation of potexviruses isolated from three different genera in the family Cactaceae

scientific article published on 29 January 2004

Molecular characterization of a new furovirus mainly infecting rye.

scientific article published on January 1999

Molecular characterization of isolates of anagyris vein yellowing virus, plantago mottle virus and scrophularia mottle virus -- comparison of various approaches for tymovirus classification

scientific article

Mutation analysis of cis-elements in the 3'- and 5'-untranslated regions of satellite tobacco necrosis virus strain C RNA.

scientific article

Mutational analysis of the pseudoknot in the tRNA-like structure of turnip yellow mosaic virus RNA. Aminoacylation efficiency and RNA pseudoknot stability

scientific article published in January 1992

Nemesia ring necrosis virus: a new tymovirus with a genomic RNA having a histidylatable tobamovirus-like 3' end.

scientific article

New structure model for the packaging signal in the genome of group IIa coronaviruses.

scientific article published on 11 April 2007

Nonstructural alfalfa mosaic virus RNA-coded proteins present in tobacco leaf tissue

scientific article published in December 1984

Novel reactions of RNAase P with a tRNA-like structure in turnip yellow mosaic virus RNA.

scientific article

Properties of the tobacco mosaic virus intermediate length RNA-2 and its translation

scientific article published in May 1983

Properties of turnip yellow mosaic virus in cesium chloride solutions: the formation of high-density components

scientific article published in July 1982

Protonatable hairpins are conserved in the 5'-untranslated region of tymovirus RNAs

scientific article published on December 1996

Protonation of non-Watson-Crick base pairs and encapsidation of turnip yellow mosaic virus RNA

scientific article

PseudoBase: a database with RNA pseudoknots

scientific article published on January 2000

Pseudoknots: a new motif in the RNA game

scientific article published on April 1, 1990

RNA pseudoknots: structure, detection, and prediction

scientific article published in January 1989

RNA-protein interactions in spherical viruses

scientific article

Secondary structure model of the coat protein gene of turnip yellow mosaic virus RNA: long, C-rich, single-stranded regions

scientific article published in October 1996

Selective Pressures on RNA Hairpins In Vivo and In Vitro

scientific article published on January 1, 2002

Self-induced structural switches in RNA.

scientific article

Separation of mutant and wild-type ribosomes based on differences in their anti Shine-Dalgarno sequence

scientific article published on November 1993

Similarities between the secondary structure of satellite tobacco mosaic virus and tobamovirus RNAs

scientific article

Single molecule studies of RNA secondary structure: AFM of TYMV viral RNA.

scientific article published in November 2004

Stem-loop structures can effectively substitute for an RNA pseudoknot in -1 ribosomal frameshifting.

scientific article published on 29 July 2011

Structural motifs in the RNA encoded by the early nodulation gene enod40 of soybean

scientific article

Structural similarities between the RNAs of two satellites of tobacco necrosis virus

scientific article published in December 1991

Structural variation and functional importance of a D-loop-T-loop interaction in valine-accepting tRNA-like structures of plant viral RNAs

scientific article

Structure and function of RNA pseudoknots

scientific article published on January 1995

Structure and variability of the 3' end of RNA 3 of Beet soil-borne pomovirus--a virus with uncertain pathogenic effects

scientific article published in January 2000

Structure of the 3'-hairpin of the TYMV pseudoknot: preformation in RNA folding

scientific article published on December 1998

The 5' and 3' extremities of the satellite tobacco necrosis virus translational enhancer domain contribute differentially to stimulation of translation

scientific article published in February 2002

The 5' non-translated region of Varroa destructor virus 1 (genus Iflavirus): structure prediction and IRES activity in Lymantria dispar cells

scientific article

The 5'-proximal hairpin of turnip yellow mosaic virus RNA: its role in translation and encapsidation

scientific article published on July 2003

The central pseudoknot in 16S ribosomal RNA is needed for ribosome stability but is not essential for 30S initiation complex formation

scientific article published on October 1996

The computer simulation of RNA folding pathways using a genetic algorithm

scientific article published in June 1995

The influence of a metastable structure in plasmid primer RNA on antisense RNA binding kinetics

scientific article published on September 1995

The nucleotide sequence of satellite tobacco necrosis virus strain C and helper-assisted replication of wild-type and mutant clones of the virus

scientific article published on June 1, 1998

The occurrence of the coat protein messenger RNA in the minor components of turnip yellow mosaic virus

scientific article published in August 1977

The three-dimensional folding of the tRNA-like structure of tobacco mosaic virus RNA. A new building principle applied twice.

scientific article published on November 1984

Three-dimensional models of the tRNA-like 3' termini of some plant viral RNAs

scientific article published on January 1983

Tobacco rattle virus genome alterations in the Hosta hybrid ‘Green Fountain’ and other plants: reassortments, recombinations and deletions

scientific article published on June 13, 2012

Translation of turnip yellow mosaic virus RNA in vitro: a closed and an open coat protein cistron

scientific article published on December 1, 1976

Translational studies with turnip yellow mosaic virus RNAs isolated from major and minor virus particles

scientific article published in July 1979

Two histidines of the coat protein of turnip yellow mosaic virus at the capsid interior are crucial for viability

scientific article published in May 2004

tRNA-like structure regulates translation of Brome mosaic virus RNA.

scientific article published on April 2004