List of works by Joshua F. McMichael

Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards

scientific article published on 01 November 2018

Age-related mutations associated with clonal hematopoietic expansion and malignancies

scientific article

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

scientific article (publication date: 31 January 2017)

CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer

CIViCpy: A Python Software Development and Analysis Toolkit for the CIViC Knowledgebase

scientific article published on 01 March 2020

Cancer Immunogenomics: Computational Neoantigen Identification and Vaccine Design.

scientific article published on 7 April 2017

Clonal architectures and driver mutations in metastatic melanomas

scientific article

DGIdb 2.0: mining clinically relevant drug-gene interactions.

scientific article

DNMT3A Mutations in Acute Myeloid Leukemia

scientific article (publication date: 16 December 2010)

DoCM: a database of curated mutations in cancer.

scientific article

Endocrine-therapy-resistant ESR1 variants revealed by genomic characterization of breast-cancer-derived xenografts

scientific article

Expanding the computational toolbox for mining cancer genomes

scientific article

Genome Modeling System: A Knowledge Management Platform for Genomics

scientific article published on 9 July 2015

Genome remodelling in a basal-like breast cancer metastasis and xenograft

scientific article

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia

scientific article

Integrated analysis of germline and somatic variants in ovarian cancer.

scientific article

Integration of the Drug-Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts

scientific article published on 25 November 2020

Integrative omics analyses broaden treatment targets in human cancer

scientific article published on 27 July 2018

Mutational landscape and significance across 12 major cancer types

scientific article

Optimizing cancer genome sequencing and analysis

scientific article published in September 2015

Pathogenic Germline Variants in 10,389 Adult Cancers.

scientific article published in April 2018

Patterns and functional implications of rare germline variants across 12 cancer types

scientific article

Recurring mutations found by sequencing an acute myeloid leukemia genome

scientific article

Regulated Phosphosignaling Associated with Breast Cancer Subtypes and Druggability

scientific article published on 13 June 2019

Standard operating procedure for curation and clinical interpretation of variants in cancer

scientific article published on 29 November 2019

Systematic discovery of complex insertions and deletions in human cancers.

scientific article published on 14 December 2015

Visualizing tumor evolution with the fishplot package for R

scientific article

Whole-genome analysis informs breast cancer response to aromatase inhibition

scientific article

pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens

scientific article published on 06 January 2020

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