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List of works by Rafael Yuste

"Whole-body imaging of neural and muscle activity during behavior in Hydra vulgaris: effect of osmolarity on contraction bursts"

scientific article published on 22 July 2020

A National Network of Neurotechnology Centers for the BRAIN Initiative

scientific article published on 14 October 2015

A blanket of inhibition: functional inferences from dense inhibitory connectivity.

scientific article

A community-based transcriptomics classification and nomenclature of neocortical cell types

scientific article published on 24 August 2020

A fast ruthenium polypyridine cage complex photoreleases glutamate with visible or IR light in one and two photon regimes.

scientific article published on 11 December 2009

A miniaturized multi-clamp CMOS amplifier for intracellular neural recording

scientific article published on 15 August 2019

A neural circuit for angular velocity computation

scientific article

A portable laser photostimulation and imaging microscope

scientific article

A problem with Hebb and local spikes.

scientific article

A trimethoprim-based chemical tag for live cell two-photon imaging

scientific article

A two-photon and second-harmonic microscope ⬇️

scientific article published on May 1, 2003

A very large-scale microelectrode array for cellular-resolution electrophysiology

scientific article published on 27 November 2017

A visual thalamocortical slice.

scientific article published in February 2006

Aberrant Cortical Ensembles and Schizophrenia-like Sensory Phenotypes in Setd1a+/- Mice

scientific article published on 16 January 2020

Activity-dependent dendritic spine neck changes are correlated with synaptic strength

scientific article

Activity-regulated dynamic behavior of early dendritic protrusions: evidence for different types of dendritic filopodia.

scientific article published in August 2003

Acute Focal Seizures Start As Local Synchronizations of Neuronal Ensembles

scientific article published on 19 August 2019

Addendum: A very large-scale microelectrode array for cellular-resolution electrophysiology

scientific article published in Nature Communications

Age-based comparison of human dendritic spine structure using complete three-dimensional reconstructions

scientific article published on 17 June 2012

Altered Cortical Ensembles in Mouse Models of Schizophrenia.

scientific article published in April 2017

An in vitro model of neuronal ensembles

scientific article published on 09 June 2022

Analysis of multineuronal activation patterns from calcium-imaging experiments in brain slices.

scientific article

Astrocytes regulate cortical state switching in vivo

scientific article

Astrocytic regulation of cortical UP states

scientific article published on 25 October 2011

Attenuation of Synaptic Potentials in Dendritic Spines

scientific article published in August 2017

Attractor dynamics of network UP states in the neocortex

scientific article

Author Correction: The new nanophysiology: regulation of ionic flow in neuronal subcompartments

scientific article published on 01 August 2019

Automatic reconstruction of neural morphologies with multi-scale tracking

scientific article published on 25 June 2012

Axo-dendritic overlap and laminar projection can explain interneuron connectivity to pyramidal cells.

scientific article published on 31 August 2012

BDNF regulates spontaneous correlated activity at early developmental stages by increasing synaptogenesis and expression of the K+/Cl- co-transporter KCC2.

scientific article published in April 2003

Back to the Basics: Cnidarians Start to Fire

scientific article published on 29 December 2016

Bidirectional regulation of hippocampal mossy fiber filopodial motility by kainate receptors: a two-step model of synaptogenesis

scientific article

Brain maps at the nanoscale

scientific article published on 01 April 2019

Ca2+ imaging of mouse neocortical interneurone dendrites: Ia-type K+ channels control action potential backpropagation

scientific article published on 4 July 2003

Ca2+ imaging of mouse neocortical interneurone dendrites: contribution of Ca2+-permeable AMPA and NMDA receptors to subthreshold Ca2+dynamics

scientific article published on 4 July 2003

Calcium Microdomains in Aspiny Dendrites ⬇️

scientific article published on November 13, 2003

Calcium dynamics of spines depend on their dendritic location

scientific article

Calcium imaging of cortical networks dynamics

scientific article

Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy

scientific article

Calcium oscillations in neocortical astrocytes under epileptiform conditions

scientific article published in January 2002

Circuit neuroscience: the road ahead

scientific article published in July 2008

Classification of neocortical interneurons using affinity propagation

scientific article published on 3 December 2013

Comment on "Principles of connectivity among morphologically defined cell types in adult neocortex".

scientific article published in September 2016

Comparative Evaluation of Genetically Encoded Voltage Indicators

scientific article published on 01 January 2019

Comparison between supervised and unsupervised classifications of neuronal cell types: a case study ⬇️

scientific article published on January 2011

Comprehensive machine learning analysis of Hydra behavior reveals a stable basal behavioral repertoire

scientific article published on 28 March 2018

Conserved cell types with divergent features in human versus mouse cortex

scientific article published in 2019 in Nature

Controlling Visually Guided Behavior by Holographic Recalling of Cortical Ensembles

scientific article published on 27 June 2019

Cooperative Subnetworks of Molecularly Similar Interneurons in Mouse Neocortex.

scientific article

Correction to "Statistically Reconstructed Multiplexing for Very Dense, High-Channel-Count Acquisition Systems"

scientific article published on 20 August 2018

Correlation between axonal morphologies and synaptic input kinetics of interneurons from mouse visual cortex.

scientific article published on 8 February 2006

Cortical Control of Spatial Resolution by VIP+ Interneurons. ⬇️

scientific article

Cortical area and species differences in dendritic spine morphology

scientific article published on March 2002

Decorrelating action of inhibition in neocortical networks

scientific article published on June 2013

Dendritic Spines and Distributed Circuits ⬇️

scientific article published on September 8, 2011

Dendritic size of pyramidal neurons differs among mouse cortical regions.

scientific article published on 29 September 2005

Dendritic spines and linear networks

scientific article

Dendritic spines linearize the summation of excitatory potentials

scholarly article

Dense Inhibitory Connectivity in Neocortex ⬇️

scientific article published on March 24, 2011

Dense and overlapping innervation of pyramidal neurons by chandelier cells.

scientific article published in January 2013

Dense, unspecific connectivity of neocortical parvalbumin-positive interneurons: a canonical microcircuit for inhibition?

scientific article

Depolarizing effect of neocortical chandelier neurons

scientific article published on 20 October 2009

Designing optimal stimuli to control neuronal spike timing

scientific article

Developmental regulation of spine and filopodial motility in primary visual cortex: reduced effects of activity and sensory deprivation

scientific article published in May 2004

Electrical compartmentalization in dendritic spines

scientific article published on 29 May 2013

Electrochemical potential control of charge state and fluorescence of nitrogen vacancy centers in nanodiamonds

Electrodiffusion models of synaptic potentials in dendritic spines

scientific article published on 13 August 2019

Endogenous sequential cortical activity evoked by visual stimuli.

scientific article published on June 2015

Engineering a genetically-encoded SHG chromophore by electrostatic targeting to the membrane

scientific article

Fast nonnegative deconvolution for spike train inference from population calcium imaging

scientific article

Flexible Nanopipettes for Minimally Invasive Intracellular Electrophysiology In Vivo

scientific article published on 01 January 2019

Fluorescence microscopy today

scientific article

Four ethical priorities for neurotechnologies and AI.

scientific article published in November 2017

From the neuron doctrine to neural networks

scientific article

Gap junctions in developing neocortex: a review

scientific article published on 01 December 2004

Genesis of dendritic spines: insights from ultrastructural and imaging studies

scientific article

Genetic voltage indicators

scientific article published on 12 September 2019

Glial Calcium Waves are Triggered by Seizure Activity and Not Essential for Initiating Ictal Onset or Neurovascular Coupling

scientific article published in June 2017

Global dendritic calcium spikes in mouse layer 5 low threshold spiking interneurones: implications for control of pyramidal cell bursting

scientific article

High speed two-photon imaging of calcium dynamics in dendritic spines: consequences for spine calcium kinetics and buffer capacity.

scientific article

High-channel-count, high-density microelectrode array for closed-loop investigation of neuronal networks

scientific article published on August 2015

Holographic imaging and photostimulation of neural activity

scientific article published on 13 April 2018

How to build a two-photon microscope with a confocal scan head

scientific article

Imaging Voltage in Neurons ⬇️

scientific article published on January 13, 2011

Imaging action potentials with calcium indicators

scientific article published in November 2009

Imaging action potentials with calcium indicators

scientific article published on 01 August 2011

Imaging and Optically Manipulating Neuronal Ensembles.

scientific article

Imaging membrane potential in dendritic spines.

scientific article

Imaging the motility of dendritic protrusions and axon terminals: roles in axon sampling and synaptic competition

scientific article published in December 2004

Imprinting and recalling cortical ensembles

scientific article

Instantaneous three-dimensional sensing using spatial light modulator illumination with extended depth of field imaging

scientific article

Internal dynamics determine the cortical response to thalamic stimulation

scientific article published on 01 December 2005

Large-scale imaging of cortical network activity with calcium indicators.

scientific article published on 17 March 2005

Light sheet theta microscopy for rapid high-resolution imaging of large biological samples.

scientific article published on 29 May 2018

Mapping the Whole-Body Muscle Activity of Hydra vulgaris

scientific article published on 23 May 2019

Modulation of nitrogen vacancy charge state and fluorescence in nanodiamonds using electrochemical potential

scientific article published on 24 March 2016

Morphological and Physiological Characterization of Layer VI Corticofugal Neurons of Mouse Primary Visual Cortex ⬇️

scientific article published on May 1, 2003

Multi-scale approaches for high-speed imaging and analysis of large neural populations

scientific article

Multiphoton stimulation of neurons

scientific article

Multiphoton stimulation of neurons and spines

scientific article

Nanotools for neuroscience and brain activity mapping

scientific article published on 20 March 2013

Neocortical activity is stimulus- and scale-invariant

scientific article

Neocortical circuits: evolutionary aspects and specificity versus non-specificity of synaptic connections. Remarks, main conclusions and general comments and discussion

scientific article published in March 2002

Neuronal photoactivation through second-harmonic near-infrared absorption by gold nanoparticles

scientific article published on 05 December 2018

Neuroscience thinks big (and collaboratively).

scientific article published in September 2013

Neuroscience. The brain activity map

scientific article published on 07 March 2013

New insights into the classification and nomenclature of cortical GABAergic interneurons

scientific article published on 6 February 2013

Non-overlapping Neural Networks in Hydra vulgaris.

scientific article

Of mice and men, and chandeliers

scientific article published on 30 September 2008

On testing neural network models

scientific article published on 21 October 2015

On the Necessity of Ethical Guidelines for Novel Neurotechnologies

scientific article published in November 2016

On the electrical function of dendritic spines

scientific article published on February 2004

Opening Holes in the Blanket of Inhibition: Localized Lateral Disinhibition by VIP Interneurons

scientific article published on March 2016

Optical control of focal epilepsy in vivo with caged γ‐aminobutyric acid ⬇️

scientific article published on January 1, 2012

Optical studies of calcium dynamics in developing neocortical neurons

Doctoral thesis written by Rafael Yuste in 1992

Optical triggered seizures using a caged 4-Aminopyridine

scientific article published on 4 February 2015

Orientation Tuning Depends on Spatial Frequency in Mouse Visual Cortex.

scientific article published on 28 September 2016

Origin and classification of neocortical interneurons

scientific article published in November 2005

Overproduction of Neurons Is Correlated with Enhanced Cortical Ensembles and Increased Perceptual Discrimination

scientific article published on October 2017

Parvalbumin-Positive Interneurons Regulate Neuronal Ensembles in Visual Cortex

scientific article published on 6 July 2017

Persistently active, pacemaker-like neurons in neocortex

scientific article published on 15 October 2007

Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex

scientific article

Photorelease of GABA with Visible Light Using an Inorganic Caging Group

scientific article published on 13 August 2008

Playing the piano with the cortex: role of neuronal ensembles and pattern completion in perception and behavior

scientific article published on 10 April 2020

Protein kinase A regulates calcium permeability of NMDA receptors.

scientific article published on 12 March 2006

Publisher Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types

scientific article published on 04 December 2020

Publisher Correction: The new nanophysiology: regulation of ionic flow in neuronal subcompartments

scientific article published on 01 August 2019

Quantitative classification of somatostatin-positive neocortical interneurons identifies three interneuron subtypes.

scientific article published on 14 May 2010

Quantitative morphologic classification of layer 5 neurons from mouse primary visual cortex ⬇️

scientific article published on July 7, 2003

Random positions of dendritic spines in human cerebral cortex

scientific article

Reduced Repertoire of Cortical Microstates and Neuronal Ensembles in Medically Induced Loss of Consciousness

scientific article published on 01 May 2019

Regulation of dendritic length and branching by semaphorin 3A.

scientific article

Regulation of dendritic spine motility and stability by Rac1 and Rho kinase: evidence for two forms of spine motility

scientific article

Reliable and Elastic Propagation of Cortical Seizures In Vivo.

scientific article published on June 2017

Reverse optical probing (ROPING) of neocortical circuits

scientific article published in November 2006

Role of Rho GTPases in the morphogenesis and motility of dendritic spines

scientific article published in January 2008

Role of dendritic spines in action potential backpropagation: a numerical simulation study

scientific article published in November 2002

Role of inhibitory control in modulating focal seizure spread

scientific article published on 01 July 2018

RuBi-Glutamate: Two-Photon and Visible-Light Photoactivation of Neurons and Dendritic spines

scientific article

SLM Microscopy: Scanless Two-Photon Imaging and Photostimulation with Spatial Light Modulators

scientific article

Second harmonic generation in neurons: electro-optic mechanism of membrane potential sensitivity

scientific article

Second harmonic imaging of membrane potential of neurons with retinal

scientific article published in September 2004

Second-harmonic generation imaging of membrane potential with photon counting

scientific article

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data

scientific article

Simultaneous Multi-plane Imaging of Neural Circuits

scientific article

Simultaneous imaging of neural activity in three dimensions

scientific article

Simultaneous two-photon imaging and two-photon optogenetics of cortical circuits in three dimensions

scientific article published on 7 February 2018

Single-shock LTD by local dendritic spikes in pyramidal neurons of mouse visual cortex

scientific article

Sodium channels amplify spine potentials

scientific article

Somatostatin Interneurons Control a Key Component of Mismatch Negativity in Mouse Visual Cortex.

scientific article published on 05 July 2016

Space matters: local and global dendritic Ca2+ compartmentalization in cortical interneurons

scientific article

Spatial distribution of neurons innervated by chandelier cells

scientific article

Spatial light modulator microscopy

scientific article

Spike inference from calcium imaging using sequential Monte Carlo methods.

scientific article published on July 2009

Spine motility. Phenomenology, mechanisms, and function

scientific article

State-Dependent Function of Neocortical Chandelier Cells ⬇️

scientific article published on December 7, 2011

Statistical significance of precisely repeated intracellular synaptic patterns

scientific article

Statistically Reconstructed Multiplexing for Very Dense, High-Channel-Count Acquisition Systems

scientific article published in February 2018

Stimulating neurons with light.

scientific article

Super-multiplex vibrational imaging.

scientific article

Synfire chains and cortical songs: temporal modules of cortical activity.

scientific article

Systematic regulation of spine sizes and densities in pyramidal neurons

scientific article published on August 2003

Targeted intracellular voltage recordings from dendritic spines using quantum-dot-coated nanopipettes

scientific article

Temporal dynamics in fMRI resting-state activity

scientific article published on 20 April 2015

Thalamocortical Bursts Trigger Recurrent Activity in Neocortical Networks: Layer 4 as a Frequency-Dependent Gate

scholarly article by Michael Beierlein et al published 15 November 2002 in Journal of Neuroscience

Thalamocortical bursts trigger recurrent activity in neocortical networks: layer 4 as a frequency-dependent gate

scientific article published in November 2002

The New Century of the Brain

scientific article

The Origins of the BRAIN Initiative: A Personal Journey

scientific article published in November 2017

The brain activity map project and the challenge of functional connectomics

scientific article

The brain activity map: imaging the activity of entire neural circuits

scientific article published on 8 July 2013

The cortex as a central pattern generator.

scientific article

The discovery of dendritic spines by Cajal

scientific article published in 2015

The enigmatic function of chandelier cells

scientific article

The logic of inhibitory connectivity in the neocortex.

scientific article

The spine neck filters membrane potentials

scholarly article

Three-dimensional analysis of spiny dendrites using straightening and unrolling transforms.

scientific article published on October 2012

Toward a Global BRAIN Initiative

scientific article (publication date: February 2017)

Two-Color Volumetric Imaging of Neuronal Activity of Cortical Columns.

scientific article published in May 2019

Two-Photon Optogenetic Mapping of Excitatory Synaptic Connectivity and Strength

scientific article published on 13 September 2018

Two-photon calcium imaging of spines and dendrites

scientific article published on 01 June 2009

Two-photon imaging with diffractive optical elements

scientific article

Two-photon mapping of neural circuits

scientific article published on 01 May 2011

Two-photon microscopy with diffractive optical elements and spatial light modulators ⬇️

scientific article published on September 15, 2010

Two-photon neuronal and astrocytic stimulation with azobenzene-based photoswitches.

scientific article

Two-photon optical interrogation of individual dendritic spines with caged dopamine

scientific article published on 17 May 2013

Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation

scientific article

Two-photon optogenetics of dendritic spines and neural circuits

scientific article

Two-photon photostimulation and imaging of neural circuits

scientific article

Two-photon uncaging of neurochemicals using inorganic metal complexes

scientific article published on 07 February 2005

UP states protect ongoing cortical activity from thalamic inputs

scientific article

Ultrastructural, Molecular and Functional Mapping of GABAergic Synapses on Dendritic Spines and Shafts of Neocortical Pyramidal Neurons

scientific article published on 01 July 2019

Ultrastructure of dendritic spines: correlation between synaptic and spine morphologies

scientific article published on 15 October 2007

VIP+ interneurons control neocortical activity across brain states

scientific article published on 09 March 2016

Visual stimuli recruit intrinsically generated cortical ensembles

scientific article

moco: Fast Motion Correction for Calcium Imaging

scientific article

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