List of works - Minkyung Baek

Absolute binding free energies for octa-acids and guests in SAMPL5 : Evaluating binding free energies for octa-acid and guest complexes in the SAMPL5 blind challenge.

scientific article published on 30 September 2016

Absolute binding free energy calculations of CBClip host-guest systems in the SAMPL5 blind challenge.

scientific article published on 27 September 2016

Accurate prediction of protein structures and interactions using a three-track neural network

scientific article

Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learning

scientific article published on 30 August 2019

Binding Site Prediction of Proteins with Organic Compounds or Peptides Using GALAXY Web Servers.

scientific article

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

scientific article published on 25 October 2019

Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein–Ligand Docking

scientific article published on 12 February 2021

GalaxyDock BP2 score: a hybrid scoring function for accurate protein-ligand docking

scientific article published on 16 June 2017

GalaxyDock3: Protein-ligand docking that considers the full ligand conformational flexibility

scientific article published on 19 August 2019

GalaxyHeteromer: protein heterodimer structure prediction by template-based and ab initio docking

scientific article published on 01 July 2021

GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure

scientific article

GalaxyTongDock: Symmetric and asymmetric ab initio protein-protein docking web server with improved energy parameters

scientific article published on 07 June 2019

Generalized biomolecular modeling and design with RoseTTAFold All-Atom

scientific article published on 07 March 2024

Hallucinating symmetric protein assemblies ⬇️

scientific article published on 15 September 2022

Modeling Protein Homo-Oligomer Structures with GalaxyHomomer Web Server

scientific article published on 01 January 2020

Novel Compound Heterozygote Mutation in IL10RA in a Patient With Very Early-Onset Inflammatory Bowel Disease

scientific article published on 01 February 2019

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

scientific article

Prediction of protein oligomer structures using GALAXY in CASP13

scientific article published on 09 October 2019

Scaffolding protein functional sites using deep learning ⬇️

scientific article published on 22 July 2022

Structure prediction of biological assemblies using GALAXY in CAPRI rounds 38-45

scientific article published on 27 November 2019

Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.

scientific article published on 22 October 2016

The challenge of modeling protein assemblies: The CASP12-CAPRI experiment.

scientific article published on 10 November 2017

Top-down design of protein architectures with reinforcement learning

scientific article published on 20 April 2023

List of works by Minkyung Baek

Absolute binding free energies for octa-acids and guests in SAMPL5 : Evaluating binding free energies for octa-acid and guest complexes in the SAMPL5 blind challenge.

Absolute binding free energy calculations of CBClip host-guest systems in the SAMPL5 blind challenge.

Accurate prediction of protein structures and interactions using a three-track neural network

Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learning

Binding Site Prediction of Proteins with Organic Compounds or Peptides Using GALAXY Web Servers.

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein–Ligand Docking

GalaxyDock BP2 score: a hybrid scoring function for accurate protein-ligand docking

GalaxyDock3: Protein-ligand docking that considers the full ligand conformational flexibility

GalaxyHeteromer: protein heterodimer structure prediction by template-based and ab initio docking

GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure

GalaxyTongDock: Symmetric and asymmetric ab initio protein-protein docking web server with improved energy parameters

Generalized biomolecular modeling and design with RoseTTAFold All-Atom

Hallucinating symmetric protein assemblies ⬇️

Modeling Protein Homo-Oligomer Structures with GalaxyHomomer Web Server

Novel Compound Heterozygote Mutation in IL10RA in a Patient With Very Early-Onset Inflammatory Bowel Disease

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

Prediction of protein oligomer structures using GALAXY in CASP13

Scaffolding protein functional sites using deep learning ⬇️

Structure prediction of biological assemblies using GALAXY in CAPRI rounds 38-45

Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.

The challenge of modeling protein assemblies: The CASP12-CAPRI experiment.

Top-down design of protein architectures with reinforcement learning