List of works - Stuart E. Jones

A guide to the natural history of freshwater lake bacteria

scientific article

A source of terrestrial organic carbon to investigate the browning of aquatic ecosystems

scientific article (publication date: 2013)

Chlorophyll–total phosphorus relationships emerge from multiscale interactions from algae to catchments

scientific article published in 2022

Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling

scientific article published on 20 February 2018

Comparison of primer sets for use in automated ribosomal intergenic spacer analysis of aquatic bacterial communities: an ecological perspective

scientific article published on 22 November 2006

Concentration and biochemical gradients of seston in Lake Ontario

article

Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity

scientific article

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

scientific article published in September 2015

Direct and Terrestrial Vegetation-mediated Effects of Environmental Change on Aquatic Ecosystem Processes

Dissolved organic carbon concentration controls benthic primary production: Results from in situ chambers in north-temperate lakes

article

Dormancy contributes to the maintenance of microbial diversity

scientific article

Ecosystem Consequences of Changing Inputs of Terrestrial Dissolved Organic Matter to Lakes: Current Knowledge and Future Challenges

article

Erratum Dissolved organic carbon concentration controls benthic primary production: Results from in situ chambers in north-temperate lakes

scholarly article

Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes

scientific article published on 22 June 2009

Experimental manipulations of microbial food web interactions in a humic lake: shifting biological drivers of bacterial community structure

scientific article published in August 2006

Experimental whole-lake dissolved organic carbon increase alters fish diet and density but not growth or productivity

article

Experimental whole-lake increase of dissolved organic carbon concentration produces unexpected increase in crustacean zooplankton density.

scientific article published on 26 February 2016

Freshwater bacterial lifestyles inferred from comparative genomics

scientific article

Habitat, not resource availability, limits consumer production in lake ecosystems

article

Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information

scientific article published on July 2017

Hydrologic Setting Dictates the Sensitivity of Ecosystem Metabolism to Climate Variability in Lakes

scientific article

Hydrologic setting constrains lake heterotrophy and terrestrial carbon fate

article

Improving estimates and forecasts of lake carbon dynamics using data assimilation

scientific article published in 2019

Interannual dynamics and phenology of bacterial communities in a eutrophic lake

article

Landscape patterns shape wetland pond ecosystem function from glacial headwaters to ocean

scientific article published in 2017

Life history constraints explain negative relationship between fish productivity and dissolved organic carbon in lakes.

scientific article

Mapping genomic features to functional traits through microbial whole genome sequences.

scientific article published in January 2014

Metabolic and physiochemical responses to a whole-lake experimental increase in dissolved organic carbon in a north-temperate lake

article

Microbiomes in light of traits: A phylogenetic perspective

scientific article published in November 2015

Model-Data Fusion to Test Hypothesized Drivers of Lake Carbon Cycling Reveals Importance of Physical Controls

article

Molecular mechanisms of ionic liquid cytotoxicity probed by an integrated experimental and computational approach

scientific article published on 2 February 2016

Negative frequency-dependent growth underlies the stable coexistence of two cosmopolitan aquatic plants

scientific article published on 04 April 2019

Particle size distribution and optimal capture of aqueous macrobial eDNA

scientific article published in 2014

Phylogenetic ecology of the freshwater Actinobacteria acI lineage

scientific article

Phytoplankton traits predict ecosystem function in a global set of lakes.

scientific article

Pond methane dynamics, from microbial communities to ecosystem budget, during summer in Alaska

scientific article

Potential for atmospheric deposition of bacteria to influence bacterioplankton communities

scientific article published on 2 April 2008

Projected changes of regional lake hydrologic characteristics in response to 21st century climate change

scientific article

Resuscitation of the rare biosphere contributes to pulses of ecosystem activity

scientific article

Seasonal evaluation of biotic and abiotic factors suggests phosphorus retention in constructed floodplains in three agricultural streams

scientific article published on 27 April 2020

Sensitivity of soil respiration and microbial communities to altered snowfall

Shifting limitation of primary production: experimental support for a new model in lake ecosystems

scientific article published on 18 September 2020

Social-ecological outcomes in recreational fisheries: the interaction of lakeshore development and stocking.

scientific article published on January 2017

Spatial and temporal scales of aquatic bacterial beta diversity

scientific article

Species sorting along a subsidy gradient alters bacterial community stability

scientific article published on August 2016

Species-sorting may explain an apparent minimal effect of immigration on freshwater bacterial community dynamics

scientific article

Subsidy or Subtraction: How Do Terrestrial Inputs Influence Consumer Production in Lakes?

article

Terrestrial carbon is a resource, but not a subsidy, for lake zooplankton.

scientific article published in May 2014

Terrestrial support of lake food webs: Synthesis reveals controls over cross-ecosystem resource use

scientific article

The Influence of Hydrologic Residence Time on Lake Carbon Cycling Dynamics Following Extreme Precipitation Events

article

The University of Notre Dame Environmental Research Center (UNDERC): Sixty‐Five Years of Whole‐Ecosystem Manipulations and Counting

scientific article published in 2017

The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics

scientific article published on 23 January 2008

Typhoons initiate predictable change in aquatic bacterial communities

article by Stuart E. Jones et al published July 2008 in Limnology and Oceanography

Understanding how microbiomes influence the systems they inhabit

scientific article published on 24 August 2018

List of works by Stuart E. Jones

A guide to the natural history of freshwater lake bacteria

A source of terrestrial organic carbon to investigate the browning of aquatic ecosystems

Chlorophyll–total phosphorus relationships emerge from multiscale interactions from algae to catchments

Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling

Comparison of primer sets for use in automated ribosomal intergenic spacer analysis of aquatic bacterial communities: an ecological perspective

Concentration and biochemical gradients of seston in Lake Ontario

Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

Direct and Terrestrial Vegetation-mediated Effects of Environmental Change on Aquatic Ecosystem Processes

Dissolved organic carbon concentration controls benthic primary production: Results from in situ chambers in north-temperate lakes

Dormancy contributes to the maintenance of microbial diversity

Ecosystem Consequences of Changing Inputs of Terrestrial Dissolved Organic Matter to Lakes: Current Knowledge and Future Challenges

Erratum Dissolved organic carbon concentration controls benthic primary production: Results from in situ chambers in north-temperate lakes

Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes

Experimental manipulations of microbial food web interactions in a humic lake: shifting biological drivers of bacterial community structure

Experimental whole-lake dissolved organic carbon increase alters fish diet and density but not growth or productivity

Experimental whole-lake increase of dissolved organic carbon concentration produces unexpected increase in crustacean zooplankton density.

Freshwater bacterial lifestyles inferred from comparative genomics

Habitat, not resource availability, limits consumer production in lake ecosystems

Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information

Hydrologic Setting Dictates the Sensitivity of Ecosystem Metabolism to Climate Variability in Lakes

Hydrologic setting constrains lake heterotrophy and terrestrial carbon fate

Improving estimates and forecasts of lake carbon dynamics using data assimilation

Interannual dynamics and phenology of bacterial communities in a eutrophic lake

Landscape patterns shape wetland pond ecosystem function from glacial headwaters to ocean

Life history constraints explain negative relationship between fish productivity and dissolved organic carbon in lakes.

Mapping genomic features to functional traits through microbial whole genome sequences.

Metabolic and physiochemical responses to a whole-lake experimental increase in dissolved organic carbon in a north-temperate lake

Microbiomes in light of traits: A phylogenetic perspective

Model-Data Fusion to Test Hypothesized Drivers of Lake Carbon Cycling Reveals Importance of Physical Controls

Molecular mechanisms of ionic liquid cytotoxicity probed by an integrated experimental and computational approach

Negative frequency-dependent growth underlies the stable coexistence of two cosmopolitan aquatic plants

Particle size distribution and optimal capture of aqueous macrobial eDNA

Phylogenetic ecology of the freshwater Actinobacteria acI lineage

Phytoplankton traits predict ecosystem function in a global set of lakes.

Pond methane dynamics, from microbial communities to ecosystem budget, during summer in Alaska

Potential for atmospheric deposition of bacteria to influence bacterioplankton communities

Projected changes of regional lake hydrologic characteristics in response to 21st century climate change

Resuscitation of the rare biosphere contributes to pulses of ecosystem activity

Seasonal evaluation of biotic and abiotic factors suggests phosphorus retention in constructed floodplains in three agricultural streams

Sensitivity of soil respiration and microbial communities to altered snowfall

Shifting limitation of primary production: experimental support for a new model in lake ecosystems

Social-ecological outcomes in recreational fisheries: the interaction of lakeshore development and stocking.

Spatial and temporal scales of aquatic bacterial beta diversity

Species sorting along a subsidy gradient alters bacterial community stability

Species-sorting may explain an apparent minimal effect of immigration on freshwater bacterial community dynamics

Subsidy or Subtraction: How Do Terrestrial Inputs Influence Consumer Production in Lakes?

Terrestrial carbon is a resource, but not a subsidy, for lake zooplankton.

Terrestrial support of lake food webs: Synthesis reveals controls over cross-ecosystem resource use

The Influence of Hydrologic Residence Time on Lake Carbon Cycling Dynamics Following Extreme Precipitation Events

The University of Notre Dame Environmental Research Center (UNDERC): Sixty‐Five Years of Whole‐Ecosystem Manipulations and Counting

The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics

Typhoons initiate predictable change in aquatic bacterial communities

Understanding how microbiomes influence the systems they inhabit