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List of works by Jesse Stombaugh

Boulder ALignment Editor (ALE): a web-based RNA alignment tool

scientific article

CRISPR-mediated transcriptional activation with synthetic guide RNA

scientific article published on 26 May 2020

Classification and energetics of the base-phosphate interactions in RNA

scientific article

Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation

scientific article (publication date: October 2011)

Comprehensive survey and geometric classification of base triples in RNA structures

scientific article published on 3 November 2011

Computer identification of snoRNA genes using a Mammalian Orthologous Intron Database

scientific article

FR3D: finding local and composite recurrent structural motifs in RNA 3D structures

scientific article

Frequency and isostericity of RNA base pairs

scientific article published on 24 February 2009

Human oral, gut, and plaque microbiota in patients with atherosclerosis

scientific article

Lake microbial communities are resilient after a whole-ecosystem disturbance

scientific article published on 28 June 2012

Meeting report of the RNA Ontology Consortium January 8-9, 2011.

scientific article

Meta-analyses of studies of the human microbiota

scientific article

Microbial biogeography of public restroom surfaces

scientific article published on 23 November 2011

Microbiota regulate intestinal absorption and metabolism of fatty acids in the zebrafish

scientific article

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article

Moving pictures of the human microbiome

scientific article published in 2011

QIIME allows analysis of high-throughput community sequencing data

scientific article

RNASTAR: an RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs

scientific article

Responses of gut microbiota to diet composition and weight loss in lean and obese mice

scientific article published on 19 May 2011

Sharing and archiving nucleic acid structure mapping data

scientific article (publication date: July 2011)

SitePainter: a tool for exploring biogeographical patterns

scientific article published on 9 December 2011

Succession of microbial consortia in the developing infant gut microbiome

scientific article

Technology and data-intensive science in the beginning of the 21st century

scientific article

Tertiary structure and function of an RNA motif required for plant vascular entry to initiate systemic trafficking

scientific article

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

2012 scientific article

The Power Decoder Simulator for the Evaluation of Pooled shRNA Screen Performance

scientific article

The RNA structure alignment ontology

scientific article published on 21 July 2009

The mind-body-microbial continuum

scientific article

The non-Watson-Crick base pairs and their associated isostericity matrices

scientific article

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata

scientific article

UniFrac: an effective distance metric for microbial community comparison

scientific article

Using QIIME to analyze 16S rRNA gene sequences from microbial communities

scientific article

Using QIIME to analyze 16S rRNA gene sequences from microbial communities

article

Widespread colonization of the lung by Tropheryma whipplei in HIV infection

scientific article published on May 2013

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