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List of works by Antonio Gonzalez

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets

scientific article

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system ⬇️

scientific article

Advancing analytical algorithms and pipelines for billions of microbial sequences

scientific article

American Gut: an Open Platform for Citizen Science Microbiome Research

article

Are microbiome studies ready for hypothesis-driven research?

scientific article published on 27 July 2018

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Bacterial diversity in two Neonatal Intensive Care Units (NICUs).

scientific article

Balance Trees Reveal Microbial Niche Differentiation.

scientific article published on 17 January 2017

Best practices for analysing microbiomes

scientific article published on 01 July 2018

Bringing the Dynamic Microbiome to Life with Animations

scientific article published in January 2017

Characterizing microbial communities through space and time

scientific article published on 7 December 2011

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

scientific article published on 16 November 2020

Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere

scientific article

Collaborative cloud-enabled tools allow rapid, reproducible biological insights ⬇️

scientific article published on October 25, 2012

Correction for Gonzalez et al., "Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort".

scientific article published on March 2017

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

scientific article published on 07 March 2017

Diversity of Rickettsiales in the microbiome of the lone star tick, Amblyomma americanum

scientific article

Dynamics of the human gut microbiome in inflammatory bowel disease.

scientific article published on 13 February 2017

EMPeror: a tool for visualizing high-throughput microbial community data

scientific article

Erratum to: The sponge microbiome project

scientific article published on 01 December 2018

Guiding longitudinal sampling in IBD cohorts

scientific article published on 21 October 2017

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy

scientific article published on 23 June 2020

Host remodeling of the gut microbiome and metabolic changes during pregnancy

scientific article

Identifying and Predicting Novelty in Microbiome Studies

scientific article published in 2018

Impact of ileocecal resection and concomitant antibiotics on the microbiome of the murine jejunum and colon

scientific article

Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems

Meeting report of the RNA Ontology Consortium January 8-9, 2011.

scientific article

Meta-analyses of studies of the human microbiota

scientific article

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

scientific article (publication date: July 2014)

Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort

scientific article published on September 2016

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

scientific article

Molecular cartography of the human skin surface in 3D

scientific article published on 30 March 2015

Moving pictures of the human microbiome

scientific article published in 2011

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

scientific article published on 29 May 2019

Multiple-Disease Detection and Classification across Cohorts via Microbiome Search

scientific article published on 17 March 2020

Normalization and microbial differential abundance strategies depend upon data characteristics

scientific article

Our microbial selves: what ecology can teach us

scientific article

Paroxetine Administration Affects Microbiota and Bile Acid Levels in Mice

scientific article published on 04 June 2020

Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

scientific article

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.

scientific article published on 17 April 2018

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Qiita: rapid, web-enabled microbiome meta-analysis

scientific article published on 01 October 2018

Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy"

scientific article published on 06 August 2019

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Rethinking "enterotypes".

scientific article

SitePainter: a tool for exploring biogeographical patterns

scientific article published on 9 December 2011

Striped UniFrac: enabling microbiome analysis at unprecedented scale

scientific article published on 01 November 2018

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

scientific article

Suppression of the gut microbiome ameliorates age-related arterial dysfunction and oxidative stress in mice

scientific article published on 27 February 2019

Temporal variability is a personalized feature of the human microbiome

scientific article

The mind-body-microbial continuum

scientific article

The sponge microbiome project

scientific article published on October 2017

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Tiny microbes, enormous impacts: what matters in gut microbiome studies?

scientific article

Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex

scientific article

redbiom: a Rapid Sample Discovery and Feature Characterization System

scientific article published on 25 June 2019

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