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List of works by Yoshiki Vázquez-Baeza

A communal catalogue reveals Earth's multiscale microbial diversity

scientific article published in November 2017

Advancing our understanding of the human microbiome using QIIME

scientific article

American Gut: an Open Platform for Citizen Science Microbiome Research

article

Are microbiome studies ready for hypothesis-driven research?

scientific article published on 27 July 2018

Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity

scientific article published on 25 February 2020

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Bacterial density rather than diversity correlates with hatching success across different avian species.

scientific article published on 9 February 2018

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

scientific article published on 18 August 2020

Balance Trees Reveal Microbial Niche Differentiation.

scientific article published on 17 January 2017

Bringing the Dynamic Microbiome to Life with Animations

scientific article published in January 2017

Changes in bacterial and eukaryotic communities during sewage decomposition in Mississippi river water

scientific article published on 13 November 2014

Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease

scientific article

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

scientific article published on 16 November 2020

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

scientific article published on 13 September 2020

Context-aware dimensionality reduction deconvolutes gut microbial community dynamics

scientific article published on 31 August 2020

Creating a 3D microbial and chemical snapshot of a human habitat

scientific article published on 27 February 2018

Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks

scientific article

Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection

scientific article published on 30 March 2015

Dynamics of the human gut microbiome in inflammatory bowel disease.

scientific article published on 13 February 2017

EMPeror: a tool for visualizing high-throughput microbial community data

scientific article

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease

From Sample to Multi-Omics Conclusions in under 48 Hours

scientific article (publication date: 26 April 2016)

From molecules to dynamic biological communities

scientific article

Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity

scientific article published on 07 October 2020

Guiding longitudinal sampling in IBD cohorts

scientific article published on 21 October 2017

Gut Microbiome in Schizophrenia: Altered Functional Pathways Related to Immune Modulation and Atherosclerotic Risk

scientific article published on 21 October 2020

Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity

scientific article published on 01 November 2019

HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats

scientific article

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy

scientific article published on 23 June 2020

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

scientific article published on 11 February 2020

Impacts of the Human Gut Microbiome on Therapeutics.

scientific article published on 2 October 2017

Learning representations of microbe-metabolite interactions

scientific article published on 04 November 2019

Longitudinal analysis of microbial interaction between humans and the indoor environment

scientific article

Meta-analyses of studies of the human microbiota

scientific article

Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations

scientific article published on 10 January 2020

Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment

scientific article published on 22 November 2020

Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians

scientific article published on 18 September 2018

Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis

scientific article published on 24 September 2019

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

scientific article published on 29 May 2019

Normalization and microbial differential abundance strategies depend upon data characteristics

scientific article

QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

scientific article published on 01 June 2020

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Qiita: rapid, web-enabled microbiome meta-analysis

scientific article published on 01 October 2018

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

SnapShot: the human microbiome

scientific article

Striped UniFrac: enabling microbiome analysis at unprecedented scale

scientific article published on 01 November 2018

Suppression of the gut microbiome ameliorates age-related arterial dysfunction and oxidative stress in mice

scientific article published on 27 February 2019

Temporal variability is a personalized feature of the human microbiome

scientific article

The treatment-naive microbiome in new-onset Crohn's disease

scientific article

Tiny microbes, enormous impacts: what matters in gut microbiome studies?

scientific article

Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project

scientific article

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