List of works - Zhenjiang Zech Xu

A communal catalogue reveals Earth's multiscale microbial diversity

scientific article published in November 2017

A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease

scientific article published on 29 March 2019

Advancing our understanding of the human microbiome using QIIME

scientific article

Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism

scientific article published in Nature Communications

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Best practices for analysing microbiomes

scientific article published on 01 July 2018

Calour: an Interactive, Microbe-Centric Analysis Tool

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

scientific article

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

scientific article published on 07 March 2017

Dietary effects on human gut microbiome diversity

scientific article published on 11 December 2014

Exposure to toxic metals triggers unique responses from the rat gut microbiota.

scientific article published on 26 April 2018

Guiding longitudinal sampling in IBD cohorts

scientific article published on 21 October 2017

Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction

scientific article published on 30 January 2018

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

scientific article published on 11 February 2020

Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems

Lifestyle chemistries from phones for individual profiling

scientific article (publication date: 29 November 2016)

Microbial community assembly and metabolic function during mammalian corpse decomposition.

scientific article published on 10 December 2015

Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus)

scientific article published on 31 August 2018

Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models

scientific article published on 16 February 2018

Microbiome Tools for Forensic Science

scientific article

Microbiome-wide association studies link dynamic microbial consortia to disease

scientific article

Multiple-Disease Detection and Classification across Cohorts via Microbiome Search

scientific article published on 17 March 2020

Normalization and microbial differential abundance strategies depend upon data characteristics

scientific article

Open-Source Sequence Clustering Methods Improve the State Of the Art.

scientific article

Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads

scientific article published on 31 October 2019

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.

scientific article published on 17 April 2018

Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

scientific article published on 02 December 2019

Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota

scientific article published on September 2015

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

scientific article published on 03 May 2016

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Ribosomal RNA, the lens into life

scientific article published in April 2015

Striped UniFrac: enabling microbiome analysis at unprecedented scale

scientific article published on 01 November 2018

Structural basis for diversity in the SAM clan of riboswitches

scientific article

Subsistence strategies in traditional societies distinguish gut microbiomes

scientific article

Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.

scientific article

Tiny microbes, enormous impacts: what matters in gut microbiome studies?

scientific article

Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue

scientific article published on 08 November 2018

Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project

scientific article

Vitamin D metabolites and the gut microbiome in older men

scientific article published on 26 November 2020

Which is more important for classifying microbial communities: who's there or what they can do?

scientific article

List of works by Zhenjiang Zech Xu

A communal catalogue reveals Earth's multiscale microbial diversity

A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease

Advancing our understanding of the human microbiome using QIIME

Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Best practices for analysing microbiomes

Calour: an Interactive, Microbe-Centric Analysis Tool

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

Dietary effects on human gut microbiome diversity

Exposure to toxic metals triggers unique responses from the rat gut microbiota.

Guiding longitudinal sampling in IBD cohorts

Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems

Lifestyle chemistries from phones for individual profiling

Microbial community assembly and metabolic function during mammalian corpse decomposition.

Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus)

Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models

Microbiome Tools for Forensic Science

Microbiome-wide association studies link dynamic microbial consortia to disease

Multiple-Disease Detection and Classification across Cohorts via Microbiome Search

Normalization and microbial differential abundance strategies depend upon data characteristics

Open-Source Sequence Clustering Methods Improve the State Of the Art.

Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.

Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea

Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Ribosomal RNA, the lens into life

Striped UniFrac: enabling microbiome analysis at unprecedented scale

Structural basis for diversity in the SAM clan of riboswitches

Subsistence strategies in traditional societies distinguish gut microbiomes

Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.

Tiny microbes, enormous impacts: what matters in gut microbiome studies?

Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue

Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project

Vitamin D metabolites and the gut microbiome in older men

Which is more important for classifying microbial communities: who's there or what they can do?