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List of works by Jörg Vogel

A 3' UTR-Derived Small RNA Provides the Regulatory Noncoding Arm of the Inner Membrane Stress Response

scientific article

A Candidate Approach Implicates the Secreted Salmonella Effector Protein SpvB in P-Body Disassembly ⬇️

scientific article published on March 1, 2011

A Grad-seq View of RNA and Protein Complexes in Pseudomonas aeruginosa under Standard and Bacteriophage Predation Conditions

scientific article published in 2021

A bacterial seek-and-destroy system for foreign DNA

scientific article published in Science

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD

scientific article

A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesis

scientific article

A glimpse at the evolution of virulence control

scientific article published in October 2008

A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence

scientific article published on 27 May 2020

A global survey of small RNA interactors identifies KhpA and KhpB as major RNA-binding proteins in <i>Fusobacterium nucleatum</i>

scientific article published in 2024

A green fluorescent protein (GFP)-based plasmid system to study post-transcriptional control of gene expression in vivo

scientific article

A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles

scientific article

A rough guide to the non-coding RNA world of Salmonella

scientific article

A small RNA activates CFA synthase by isoform-specific mRNA stabilization

scientific article published on 18 October 2013

A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites

scientific article

A small RNA serving both the Hfq and CsrA regulons

scientific article published on May 2013

A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome

scientific article

A systematic analysis of the RNA-targeting potential of secreted bacterial effector proteins

scientific article published on 24 August 2017

APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins

scientific article (publication date: 2 March 2017)

Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies

scientific article published on 14 October 2015

Acid stress activation of the sigma(E) stress response in Salmonella enterica serovar Typhimurium.

scientific article

Activation of gene expression by small RNA.

scientific article

Alexander Böhm (1971-2012).

scientific article published in April 2013

An NK Cell Perforin Response Elicited via IL-18 Controls Mucosal Inflammation Kinetics during Salmonella Gut Infection

scientific article (publication date: June 2016)

An RNA biology perspective on species-specific programmable RNA antibiotics

scientific article published on 01 March 2020

An RNA trap helps bacteria get the most out of chitosugars

scientific article

An antisense RNA inhibits translation by competing with standby ribosomes

scientific article

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs ⬇️

scientific article published on August 24, 2012

An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803.

scientific article

Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family

scientific article

Bacterial regulatory mechanisms: the gene and beyond ⬇️

scientific article published on April 23, 2013

Breast cancer colonization by Fusobacterium nucleatum accelerates tumor growth and metastatic progression

scientific article published on 26 June 2020

CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III

scientific article

CRISPRs extending their reach: prokaryotic RNAi protein Cas9 recruited for gene regulation ⬇️

scientific article published on June 11, 2013

Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli

scientific article published in 2022

Characterization of the role of ribonucleases in Salmonella small RNA decay

scientific article published on 3 November 2007

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

scientific article

Comparative genomics boosts target prediction for bacterial small RNAs

scientific article

Comprehensive analysis of PNA-based antisense antibiotics targeting various essential genes in uropathogenic <i>Escherichia coli</i>

scientific article published in 2022

Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides

scientific article published on 27 April 2011

Cross-species RNA-seq for deciphering host–microbe interactions

scientific article published in 2021

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

scientific article

Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.

scientific article

Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome

scientific article

Differential RNA-seq: the approach behind and the biological insight gained

scientific article published on June 2014

Differential activation and functional specialization of miR-146 and miR-155 in innate immune sensing

scientific article

Dual 3'Seq using deepSuperSAGE uncovers transcriptomes of interacting Salmonella enterica Typhimurium and human host cells

scientific article published on 19 April 2015

Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen

scientific article published on 03 July 2020

Dual RNA-seq of pathogen and host

scientific article

Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions

scientific article

Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA

scientific article

Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4.

scientific article

Experimental approaches for the discovery and characterization of regulatory small RNA.

scientific article

Experimental approaches to identify non-coding RNAs

scientific article

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

scientific article

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

scientific article

Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315

scientific article

Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions

scientific article

Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics

scientific article published on 01 May 2021

Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo

scientific article

Global regulatory functions of the Staphylococcus aureus endoribonuclease III in gene expression.

scientific article

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein

scientific article (publication date: 11 October 2016)

Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control

scientific article published on 30 March 2020

Helicobacter pylori interferes with an embryonic stem cell micro RNA cluster to block cell cycle progression

scientific article published on 25 October 2011

Hfq and its constellation of RNA

scientific article (publication date: 15 August 2011)

Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.

scientific article

How to find small non-coding RNAs in bacteria

scientific article

INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors

scientific article published in 2022

Identification of cyanobacterial non-coding RNAs by comparative genome analysis

scientific article published on 17 August 2005

Identification of regulatory RNAs in Bacillus subtilis

scientific article

In vivo expression and purification of aptamer-tagged small RNA regulators

scientific article

In vivo targets of Salmonella FinO include a FinP-like small RNA controlling copy number of a cohabitating plasmid

scientific article published on 01 May 2021

Introducing differential RNA-seq mapping to track the early infection phase for Pseudomonas phage ɸKZ

scientific article published on 25 October 2020

Investigating CRISPR RNA Biogenesis and Function Using RNA-seq

scientific article published on January 2015

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

scientific article

Meeting report: Regulating with RNA in Bacteria 2013.

scientific article published on 12 June 2014

Microbes at their best: first Mol Micro Meeting Würzburg

scientific article published on 20 October 2011

Molecular mechanism of mRNA repression in trans by a ProQ-dependent small RNA.

scientific article published on 23 March 2017

Molecular phenotyping of infection-associated small non-coding RNAs

scientific article published on November 2016

Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level

scientific article published on 12 April 2009

Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation

scientific article (publication date: 16 May 2016)

Noncoding RNA control of the making and breaking of sugars

scientific article

Nuclear lncRNA stabilization in the host response to bacterial infection

scientific article published on 22 June 2018

Opposing Wnt signals regulate cervical squamocolumnar homeostasis and emergence of metaplasia

scientific article published on 18 January 2021

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.

scientific article published on 27 July 2011

Phage proteins target and co-opt host ribosomes immediately upon infection

scientific article published in 2024

Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides

scientific article

Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis

scientific article published on May 2013

READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data

scientific article

RNA recording in single bacterial cells using reprogrammed tracrRNAs

scientific article published in August 2023

RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE.

scientific article

RNA-binding proteins in bacteria

scientific article published on 01 October 2018

RNA-mediated regulation in pathogenic bacteria

scientific article published on September 2013

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

scientific article

Recent advances in the expression, evolution, and dynamics of prokaryotic genomes

scientific article published on 29 June 2007

Recognition of the small regulatory RNA RydC by the bacterial Hfq protein

scientific article

Regulation by small RNAs in bacteria: expanding frontiers

scientific article

Regulatory RNA in bacterial pathogens

scientific article

Regulatory RNAs in prokaryotes: here, there and everywhere.

scientific article published on 2 September 2009

Regulatory small RNAs from the 3' regions of bacterial mRNAs

scientific article

RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq.

scientific article published on 5 March 2012

Resolving host-pathogen interactions by dual RNA-seq

scientific article

SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of <i>Salmonella</i>-containing vacuoles <i>in vivo</i>

publication published on 01 January 2021

Salmonella persisters undermine host immune defenses during antibiotic treatment

scientific article

Same same but different: new structural insight into CRISPR-Cas complexes

scientific article published in October 2013

SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

scientific article

Single-cell RNA-seq ties macrophage polarization to growth rate of intracellular Salmonella.

scientific article published on 14 November 2016

Single-cell RNA-seq: advances and future challenges

scientific article

Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria

scientific article published on 17 August 2020

Small RNA binding to 5' mRNA coding region inhibits translational initiation

scientific article

Small RNA functions in carbon metabolism and virulence of enteric pathogens

scientific article

Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella

scientific article

Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis

scientific article

Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon

scientific article (publication date: 2 August 2011)

Small RNAs of theBradyrhizobium/Rhodopseudomonaslineage and their analysis

article

Small RNAs promote mRNA stability to activate the synthesis of virulence factors

scientific article

Small non-coding RNAs and the bacterial outer membrane

scientific article

Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq.

scholarly article

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

scientific article

Stress-induced host membrane remodeling protects from infection by non-motile bacterial pathogens

scientific article published on 02 November 2018

Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA.

scientific article published on 28 March 2012

Sweet Business: Spot42 RNA Networks with CRP to Modulate Catabolite Repression ⬇️

scientific article published on February 4, 2011

Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

scientific article

Target identification of small noncoding RNAs in bacteria

scientific article

Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA

scientific article

The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium

scientific article

The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair

scientific article published in March 2012

The csgD mRNA as a hub for signal integration via multiple small RNAs.

scientific article published on 13 March 2012

The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803.

scientific article published in October 2008

The end is not the end: remnants of tRNA precursors live on to sponge up small regulatory RNAs

scientific article

The mammalian microRNA response to bacterial infections

scientific article published on June 2012

The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition

scientific article published on 04 June 2020

The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase

scientific article

The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation

scientific article (publication date: 17 October 2016)

The primary transcriptome of the major human pathogen Helicobacter pylori

scientific article

The role of Hfq in bacterial pathogens

scientific article published on 14 January 2010

The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E.

scientific article published on 16 August 2012

The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide

scientific article

The target spectrum of SdsR small RNA in Salmonella

scientific article

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

scientific article

Translational control and target recognition by Escherichia coli small RNAs in vivo

scientific article

Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation

scientific article

Use of aptamer tagging to identify in vivo protein binding partners of small regulatory RNAs

scientific article

cis-Encoded Small RNAs, a Conserved Mechanism for Repression of Polysaccharide Utilization in Bacteroides

scientific article (publication date: 15 September 2016)

dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42

scientific article

β-Lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity

scientific article published on January 2013

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