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List of works by Bing Zhang

A bioinformatics workflow for variant peptide detection in shotgun proteomics

scientific article

A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing

scientific article published on 3 August 2010

Alkylation damage by lipid electrophiles targets functional protein systems

scientific article published on 15 January 2014

An RNA-seq-based gene expression profiling of radiation-induced tumorigenic mammary epithelial cells

scientific article published on 04 December 2012

Analysis of expressed sequence tags in porcine uterus tissue

scientific article

BIGpre: a quality assessment package for next-generation sequencing data

scientific article

Comparative analysis of clustered regularly interspaced short palindromic repeats (CRISPRs) loci in the genomes of halophilic archaea

scientific article published in November 2009

Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host

scientific article

Complete genome of Phenylobacterium zucineum--a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562.

scientific article

Complete genome sequence of Alicyclobacillus acidocaldarius strain Tc-4-1.

scientific article published on October 2011

Complete genome sequence of Bifidobacterium longum subsp. longum BBMN68, a new strain from a healthy chinese centenarian

scientific article

Complete genome sequence of the metabolically versatile halophilic archaeon Haloferax mediterranei, a poly(3-hydroxybutyrate-co-3-hydroxyvalerate) producer

scientific article

Correction: Environmental Adaptation: Genomic Analysis of the Piezotolerant and Psychrotolerant Deep-Sea Iron Reducing Bacterium Shewanella piezotolerans WP3.

scientific article

Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus

scientific article

EST-based analysis of gene expression in the porcine brain

scientific article published in November 2004

Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3

scientific article

Gene expression profiling in porcine mammary gland during lactation and identification of breed- and developmental-stage-specific genes

scientific article published on February 2006

Global analysis of protein damage by the lipid electrophile 4-hydroxy-2-nonenal

scientific article published on 02 December 2008

Identification of immune genes of the Agamaki clam (Sinonovacula constricta) by sequencing and bioinformatic analysis of ESTs

scientific article

Identification of immune-relevant genes by expressed sequence tag analysis of head kidney from grass carp (Ctenopharyngodon idella).

scientific article

LongSAGE gene-expression profiling of Botrytis cinerea germination suppressed by resveratrol, the major grapevine phytoalexin

scientific article

Mining genes involved in the stratification of Paris polyphylla seeds using high-throughput embryo transcriptome sequencing

scientific article

Network-assisted protein identification and data interpretation in shotgun proteomics

scientific article

Novel microRNAs in silkworm (Bombyx mori).

scientific article

Protein identification using customized protein sequence databases derived from RNA-Seq data

scientific article

Proteogenomic analysis reveals unanticipated adaptations of colorectal tumor cells to deficiencies in DNA mismatch repair.

scientific article published on 18 November 2013

Proteogenomic characterization of human colon and rectal cancer

scientific article (publication date: 18 September 2014)

Proteomic analysis of colon and rectal carcinoma using standard and customized databases

scientific article published on 23 June 2015

Proteomic consequences of a single gene mutation in a colorectal cancer model

scientific article

RNA-seq data analysis at the gene and CDS levels provides a comprehensive view of transcriptome responses induced by 4-hydroxynonenal

scientific article

Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data

scientific article

Relating protein adduction to gene expression changes: a systems approach

scientific article published on 19 May 2011

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

scientific article published on 14 December 2015

The Genomes of Oryza sativa: a history of duplications

scientific article

The rubber tree genome reveals new insights into rubber production and species adaptation.

scientific article published on 23 May 2016

Transcriptome analysis of Deinagkistrodon acutus venomous gland focusing on cellular structure and functional aspects using expressed sequence tags

scientific article published on 15 June 2006

Whole transcriptome RNA-seq analysis: tumorigenesis and metastasis of melanoma

scientific article

[Analysis of gene expression profiles in heart tissues from two breeds of pigs].

scientific article published in June 2004

proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data

scientific article

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