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List of works by James F. Brinkley

A Framework for the Design of Knowledge-Based Systems in Structural Biology

A framework for using reference ontologies as a foundation for the semantic web

scientific article published on January 2006

A partnership approach for Electronic Data Capture in small-scale clinical trials ⬇️

scientific article published on May 30, 2011

A prototype natural language interface to a large complex knowledge base, the Foundational Model of Anatomy

scientific article published on January 2003

A query integrator and manager for the query web

scientific article (publication date: October 2012)

A relation-centric query engine for the Foundational Model of Anatomy.

scientific article published in January 2004

Analysis of naming errors during cortical stimulation mapping: implications for models of language representation

scientific article

Application of neuroanatomical ontologies for neuroimaging data annotation

scientific article (publication date: 2010)

Automated, computerized, feature-based phenotype analysis of slit lamp images of the mouse lens

scientific article

Automatic XQuery generation and generalized visualization for an XML interface to a relational database

scientific article published on January 2005

Challenges in reconciling different views of neuroanatomy in a reference ontology of anatomy.

scientific article published on 11 October 2007

Concept mapping to develop a framework for characterizing Electronic Data Capture (EDC) Systems

scientific article

Content-specific auditing of a large scale anatomy ontology

scientific article published on 25 February 2009

Custom views of reference ontologies.

scientific article published on January 2006

Customizable Electronic Laboratory Online (CELO): a web-based data management system builder for biomedical research laboratories.

scientific article

Dissociation of action and object naming: evidence from cortical stimulation mapping

scientific article

Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data

scientific article (publication date: 2009)

Dynamic XML-based exchange of relational data: application to the Human Brain Project

scientific article

Efficient web-based navigation of the Foundational Model of Anatomy.

scientific article

Evaluating spatial normalization methods for the human brain

scientific article published in January 2005

Evaluation and integration of disparate classification systems for clefts of the lip.

scientific article

FMA-RadLex: An application ontology of radiological anatomy derived from the foundational model of anatomy reference ontology

scientific article

FaceBase 3: analytical tools and FAIR resources for craniofacial and dental research

scientific article published on 21 September 2020

From frames to OWL2: Converting the Foundational Model of Anatomy

scientific article

Generating application ontologies from reference ontologies

scientific article

Human Development Domain of the Ontology of Craniofacial Development and Malformation

scientific article published on July 2013

Intelligent web-based whole body visualization for anatomy education.

scientific article published on January 2006

Issues in biomedical research data management and analysis: needs and barriers.

scientific article

Knowledge-based, interactive, custom anatomical scene creation for medical education: the Biolucida system.

scientific article published in January 2005

MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data

scientific article

Model driven laboratory information management systems

scientific article published on January 2006

Multi-species Ontologies of the Craniofacial Musculoskeletal System

scientific article published on August 2016

Neuroanatomical domain of the foundational model of anatomy ontology.

scientific article published on 08 January 2014

OQAFMA Querying agent for the Foundational Model of Anatomy: a prototype for providing flexible and efficient access to large semantic networks

scientific article

Ontological labels for automated location of anatomical shape differences ⬇️

scientific article (publication date: June 2012)

Ontology-based federated data access to human studies information ⬇️

scientific article published on November 3, 2012

Ontology-based image navigation: exploring 3.0-T MR neurography of the brachial plexus using AIM and RadLex

scientific article

Processes and problems in the formative evaluation of an interface to the Foundational Model of Anatomy knowledge base

scientific article

Querying non-materialized ontology views.

scientific article published on 11 October 2007

Rapid ethnographic assessment for cultural mapping

Regular paths in SparQL: querying the NCI Thesaurus.

scientific article

Representation of Structural Relationships in the Foundational Model of Anatomy

scientific article published in January 2001

Server-based approach to web visualization of integrated three-dimensional brain imaging data

scientific article

Shape-based cortical surface segmentation for visualization brain mapping

scientific article published in June 2002

The FaceBase Consortium: a comprehensive program to facilitate craniofacial research

scientific article

The FaceBase Consortium: a comprehensive resource for craniofacial researchers

scientific article published on 10 June 2016

The evolving neuroanatomical component of the Foundational Model of Anatomy

scientific article published on January 2003

Towards effective and rewarding data sharing

scientific article

Towards understanding craniofacial abnormalities: the ontology of craniofacial development and malformation

scientific article published on 18 March 2013

Unobtrusive integration of data management with fMRI analysis

scientific article

WIRM: an open source toolkit for building biomedical web applications

scientific article published on November 2002

Web service access to semantic web ontologies for data annotation

scientific article

XGI: a graphical interface for XQuery creation.

scientific article published on 11 October 2007

vSPARQL: A view definition language for the semantic web ⬇️

scientific article published on August 25, 2010

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