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List of works by Didier Debroas

A De Novo Robust Clustering Approach for Amplicon-Based Sequence Data

scientific article published on 05 December 2018

A Pediococcus strain to rescue honeybees by decreasing Nosema ceranae- and pesticide-induced adverse effects

scientific article published on 08 November 2019

A high-throughput sequencing ecotoxicology study of freshwater bacterial communities and their responses to tebuconazole.

scientific article published on 15 September 2014

A strong link between marine microbial community composition and function challenges the idea of functional redundancy

scientific article published on 20 June 2018

Active microorganisms thrive among extremely diverse communities in cloud water.

scientific article published on 8 August 2017

Anaerobic microbial communities in Lake Pavin, a unique meromictic lake in France

scientific article published on November 2005

Analysis of metagenomic data reveals common features of halophilic viral communities across continents

scientific article

Assessing the diversity and specificity of two freshwater viral communities through metagenomics

scientific article

Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA

scientific article published on 31 July 2020

Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences.

scientific article published on 11 December 2013

Bacterial Communities Associated with Four Cyanobacterial Genera Display Structural and Functional Differences: Evidence from an Experimental Approach.

scientific article

Bacterial communities associated with Microcystis colonies differ from free-living communities living in the same ecosystem

scientific article

Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments

scientific article

Community composition and activity of prokaryotes associated to detrital particles in two contrasting lake ecosystems.

scientific article published in September 2006

Community composition of lacustrine small eukaryotes in hyper-eutrophic conditions in relation to top-down and bottom-up factors

article

Community structure and dynamics of small eukaryotes targeted by new oligonucleotide probes: new insight into the lacustrine microbial food web.

scientific article

Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems.

scientific article

Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems.

scientific article

Correction: Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus

scientific article published on 7 January 2016

Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France.

scientific article

Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes

scientific article published on 6 January 2016

Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France).

scientific article published on 10 February 2016

Diversity and dynamics of free-living and particle-associated Betaproteobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities

scientific article

Diversity of Rare and Abundant Prokaryotic Phylotypes in the Prony Hydrothermal Field and Comparison with Other Serpentinite-Hosted Ecosystems

scientific article published on 6 February 2018

Diversity, spatial distribution and activity of fungi in freshwater ecosystems

scientific article published on 21 February 2019

Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems

scientific article

Effects of nutrients and warming onPlanktothrixdynamics and diversity: a palaeolimnological view based on sedimentary DNA and RNA

article

Effects of viruses and predators on prokaryotic community composition

scientific article

Evidence for an active rare biosphere within freshwater protists community.

scientific article published on March 2015

Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads

scientific article

Genetic diversity of small eukaryotes in lakes differing by their trophic status

scientific article

Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean

scientific article published on 02 July 2019

Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems

scientific article

Honeybee gut microbiota dysbiosis in pesticide/parasite co-exposures is mainly induced by Nosema ceranae

scientific article published on 28 February 2020

Impact of environmental factors on couplings between bacterial community composition and ectoenzymatic activities in a lacustrine ecosystem

scientific article published on 22 June 2009

Incorporation of 3H-thymidine by different prokaryotic groups in relation to temperature and nutrients in a lacustrine ecosystem

scientific article published on 08 June 2006

Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity

scientific article published on 29 May 2015

Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA.

scientific article

Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget--France).

scientific article

Metagenomics applied to environmental viral communities

scientific article published on 01 August 2013

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

scientific article

Metavir: a web server dedicated to virome analysis

scientific article published on 11 September 2011

Monitoring human enteric viruses in wastewater and relevance to infections encountered in the clinical setting: a one-year experiment in central France, 2014 to 2015.

scientific article

Monitoring of enterovirus diversity in wastewater by ultra-deep sequencing: An effective complementary tool for clinical enterovirus surveillance

scientific article published on 31 October 2019

New insights into the pelagic microorganisms involved in the methane cycle in the meromictic Lake Pavin through metagenomics

scientific article published on 01 March 2019

Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data.

scientific article published in March 2017

Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems: a review

article

Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity

scientific article

Plastics in the North Atlantic garbage patch: A boat-microbe for hitchhikers and plastic degraders

scientific article

Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems

scientific article published on 19 November 2020

Quantitative PCR enumeration of total/toxic Planktothrix rubescens and total cyanobacteria in preserved DNA isolated from lake sediments

scientific article (publication date: December 2011)

Reconstruction of plasmids by shotgun sequencing from environmental DNA: which bioinformatic workflow?

scientific article published on 19 May 2020

Relative importance of nutrients and mortality factors on prokaryotic community composition in two lakes of different trophic status: microcosm experiments

scientific article published in August 2005

Seasonality of archaeal proteorhodopsin and associated Marine Group IIb ecotypes (Ca. Poseidoniales) in the North Western Mediterranean Sea

scientific article published on 07 December 2020

Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes

scientific article

Short-term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation

scientific article

Spatio-Temporal Variations of Marine Biofilm Communities Colonizing Artificial Substrata Including Antifouling Coatings in Contrasted French Coastal Environments.

scientific article

Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus

scientific article

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters.

scientific article

Succession and regulation factors of small eukaryote community composition in a lacustrine ecosystem (Lake Pavin).

scientific article published on April 2006

Succession of bacterial community composition over two consecutive years in two aquatic systems: a natural lake and a lake-reservoir

scientific article published on 01 January 2006

Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems

scientific article published on 13 September 2014

Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea.

scientific article

Temporal covariation of epibacterial community and surface metabolome in the Mediterranean seaweed holobiont Taonia atomaria

scientific article published on 04 April 2019

Temporal dynamics and phylogenetic diversity of free-living and particle-associated Verrucomicrobia communities in relation to environmental variables in a mesotrophic lake

scientific article

Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes

scientific article

To what extent is the DNA of microbial eukaryotes modified during burying into lake sediments? A repeat-coring approach on annually laminated sediments

scholarly article

Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming

scientific article

Transient Dynamics of Archaea and Bacteria in Sediments and Brine Across a Salinity Gradient in a Solar Saltern of Goa, India

scientific article published on 13 August 2020

Unexpected importance of potential parasites in the composition of the freshwater small-eukaryote community

scientific article

Vertical structure of small eukaryotes in three lakes that differ by their trophic status: a quantitative approach

scientific article published on 24 June 2010

Viruses as key reservoirs of antibiotic resistance genes in the environment

scientific article published on 29 July 2019

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