List of works - Jizhong Zhou

Deep-sea oil plume enriches indigenous oil-degrading bacteria

scientific article

Molecular ecological network analyses.

scientific article

Spatial and resource factors influencing high microbial diversity in soil

scientific article

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

scientific article

Reproducibility and quantitation of amplicon sequencing-based detection

scientific article

GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes.

scientific article

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation

scholarly article

Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants

scientific article

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

scientific article

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

scientific article

Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment

scientific article published on December 1, 2001

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

scientific article

Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification

scientific article

Functional molecular ecological networks

scientific article

Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2

scientific article (publication date: 2011)

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

scientific article

Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays

scientific article published on July 2004

Global transcriptome analysis of the heat shock response of Shewanella oneidensis

scientific article

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

scientific article published on 23 March 2010

Spatial scaling of functional gene diversity across various microbial taxa.

scientific article

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

scientific article

High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats

scientific article

Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis

scientific article

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

scientific article published on 6 June 2016

Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments

scientific article

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory

scientific article

Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA

scientific article published on December 1, 1997

Empirical establishment of oligonucleotide probe design criteria

scientific article

Molecular dynamics of the Shewanella oneidensis response to chromate stress

scientific article published on 8 March 2006

Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress

scientific article

Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase

scientific article published on 24 April 2015

Pilot-scale in situ bioremedation of uranium in a highly contaminated aquifer. 2. Reduction of u(VI) and geochemical control of u(VI) bioavailability

scientific article

Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach

scientific article

Functional gene diversity of soil microbial communities from five oil-contaminated fields in China.

scientific article

The microbial gene diversity along an elevation gradient of the Tibetan grassland.

scientific article

Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins

scientific article

Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico

scientific article

Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs).

scientific article published on 24 May 2007

The electron transfer system of syntrophically grown Desulfovibrio vulgaris

scientific article published on 06 July 2009

Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community

scientific article

GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent

scientific article

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

scientific article published on October 11, 2017

Functional microarray analysis of nitrogen and carbon cycling genes across an Antarctic latitudinal transect

scientific article published on 24 May 2007

Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients

scientific article published on March 27, 2014

Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach

scientific article

GeoChip 4: a functional gene-array-based high-throughput environmental technology for microbial community analysis

scientific article

Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses.

scientific article

Environmental filtering decreases with fish development for the assembly of gut microbiota

scientific article

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis.

scientific article published on 19 June 2015

Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill

scientific article

List of works by Jizhong Zhou

Deep-sea oil plume enriches indigenous oil-degrading bacteria

Molecular ecological network analyses.

Spatial and resource factors influencing high microbial diversity in soil

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

Reproducibility and quantitation of amplicon sequencing-based detection

GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes.

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation

Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification

Functional molecular ecological networks

Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays

Global transcriptome analysis of the heat shock response of Shewanella oneidensis

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

Spatial scaling of functional gene diversity across various microbial taxa.

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats

Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory

Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA

Empirical establishment of oligonucleotide probe design criteria

Molecular dynamics of the Shewanella oneidensis response to chromate stress

Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress

Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase

Pilot-scale in situ bioremedation of uranium in a highly contaminated aquifer. 2. Reduction of u(VI) and geochemical control of u(VI) bioavailability

Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach

Functional gene diversity of soil microbial communities from five oil-contaminated fields in China.

The microbial gene diversity along an elevation gradient of the Tibetan grassland.

Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins

Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico

Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs).

The electron transfer system of syntrophically grown Desulfovibrio vulgaris

Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community

GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

Functional microarray analysis of nitrogen and carbon cycling genes across an Antarctic latitudinal transect

Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients

Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach

GeoChip 4: a functional gene-array-based high-throughput environmental technology for microbial community analysis

Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses.

Environmental filtering decreases with fish development for the assembly of gut microbiota

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis.

Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill