List of works by Jizhong Zhou

A Computational Study ofShewanella oneidensisMR-1: Structural Prediction and Functional Inference of Hypothetical Proteins ⬇️

scientific article published on January 1, 2003

A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction.

scientific article published on 2 April 2015

A buried Neolithic paddy soil reveals loss of microbial functional diversity after modern rice cultivation

A comparative proteomic analysis of Desulfovibrio vulgaris Hildenborough in response to the antimicrobial agent free nitrous acid

scientific article published on 03 April 2019

A comprehensive insight into functional profiles of free-living microbial community responses to a toxic Akashiwo sanguinea bloom

scientific article published on 05 October 2016

A dynamically growing self-organizing tree (DGSOT) for hierarchical clustering gene expression profiles

scientific article published on 6 May 2004

A general framework for quantitatively assessing ecological stochasticity

scientific article published on 07 August 2019

A high-throughput percentage-of-binding strategy to measure binding energies in DNA-protein interactions: application to genome-scale site discovery

scientific article published on 24 July 2008

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

scientific article published on 18 September 2020

Active predation, phylogenetic diversity, and global prevalence of myxobacteria in wastewater treatment plants

scientific article published in 2023

Adaptive Evolution of Sphingobium hydrophobicum C1T in Electronic Waste Contaminated River Sediment

scientific article published on 02 October 2019

Ageratina adenophora invasions are associated with microbially mediated differences in biogeochemical cycles

scientific article published on 23 April 2019

AggA is required for aggregation and increased biofilm formation of a hyper-aggregating mutant of Shewanella oneidensis MR-1.

scientific article published in March 2006

Alkaline anaerobic respiration: isolation and characterization of a novel alkaliphilic and metal-reducing bacterium

scientific article

Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling.

scientific article

Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea

scientific article published on 07 July 2020

An extracytoplasmic function sigma factor-dependent periplasmic glutathione peroxidase is involved in oxidative stress response of Shewanella oneidensis

scientific article

An integrated insight into the response of sedimentary microbial communities to heavy metal contamination.

scientific article published on 22 September 2015

An integrated study to analyze soil microbial community structure and metabolic potential in two forest types

scientific article (publication date: 2014)

Anaerobic Disposal of Arsenic-Bearing Wastes Results in Low Microbially Mediated Arsenic Volatilization

scientific article published on 7 October 2016

Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession

scientific article published on 6 May 2015

Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough

scientific article

Analysis of the functional gene structure and metabolic potential of microbial community in high arsenic groundwater

scientific article published on 21 June 2017

Annual Removal of Aboveground Plant Biomass Alters Soil Microbial Responses to Warming

scientific article

Anti-listeria Activities of Linalool and Its Mechanism Revealed by Comparative Transcriptome Analysis

scientific article published on 20 December 2019

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

scientific article published on 29 September 2016

Application of random matrix theory to microarray data for discovering functional gene modules

scientific article

Applications of functional gene microarrays for profiling microbial communities

scientific article published on 04 January 2012

Approaches to advance scientific understanding of macrosystems ecology

article

Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach

scientific article

Aridity threshold in controlling ecosystem nitrogen cycling in arid and semi-arid grasslands.

scientific article

Arsenic Methylation in Soils and Its Relationship with Microbial arsM Abundance and Diversity, and As Speciation in Rice

Assessing the microbial community and functional genes in a vertical soil profile with long-term arsenic contamination

scientific article

Assessment of data processing to improve reliability of microarray experiments using genomic DNA reference

scientific article

Assimilatory nitrate utilization by bacteria on the West Florida Shelf as determined by stable isotope probing and functional microarray analysis

scientific article

Author Correction: Continental scale structuring of forest and soil diversity via functional traits

scientific article published on 01 November 2019

Author Correction: Global diversity and biogeography of bacterial communities in wastewater treatment plants

scientific article published on 01 December 2019

Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations

scientific article

Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths

scientific article

Bacterial diversity based on 16S rRNA and gyrB genes at Yinshan mine, China

scientific article

Bacteriophage-prokaryote dynamics and interaction within anaerobic digestion processes across time and space

scientific article

Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism

scientific article published on 20 April 2016

Biodegradability of wastewater determines microbial assembly mechanisms in full-scale wastewater treatment plants

scientific article published on 06 November 2019

Biodegradation of Polyethylene and Plastic Mixtures in Mealworms (Larvae of Tenebrio molitor) and Effects on the Gut Microbiome

scientific article published on 23 May 2018

Biodegradation of polystyrene wastes in yellow mealworms (larvae of Tenebrio molitor Linnaeus): Factors affecting biodegradation rates and the ability of polystyrene-fed larvae to complete their life cycle

scientific article published on 23 October 2017

Biogeochemistry drives diversity in the prokaryotes, fungi, and invertebrates of a Panama forest.

scientific article

Biogeographic patterns of soil diazotrophic communities across six forests in the North America.

scientific article

Biogeography and Assembly of Microbial Communities in Wastewater Treatment Plants in China

scientific article published on 07 April 2020

Bioreactor performance and functional gene analysis of microbial community in a limited-oxygen fed bioreactor for co-reduction of sulfate and nitrate with high organic input

scientific article published on 13 June 2014

Bioreduction of uranium in a contaminated soil column

scientific article published in July 2005

Biotic responses buffer warming-induced soil organic carbon loss in Arctic tundra

article

Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs).

scientific article published on 24 May 2007

Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles.

scientific article

Bradymonabacteria, a novel bacterial predator group with versatile survival strategies in saline environments

scientific article published on 31 August 2020

Cas9 Nickase-Assisted RNA Repression Enables Stable and Efficient Manipulation of Essential Metabolic Genes in Clostridium cellulolyticum

scientific article

Cas9-based tools for targeted genome editing and transcriptional control.

scientific article published on 03 January 2014

Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough

scientific article

Cellular response of Shewanella oneidensis to strontium stress

scientific article

Challenges in applying microarrays to environmental studies

scientific article published on 01 June 2002

Characterization of Co(III) EDTA-Reducing Bacteria in Metal- and Radionuclide-Contaminated Groundwater

Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution

scientific article published on 11 April 2013

Characterization of microbial communities during anode biofilm reformation in a two-chambered microbial electrolysis cell (MEC).

scientific article

Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response

scientific article

Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis

scientific article (publication date: August 2009)

Characterization of the impact of acetate and lactate on ethanolic fermentation by Thermoanaerobacter ethanolicus.

scientific article published on 15 July 2009

Climate mediates continental scale patterns of stream microbial functional diversity

scientific article published on 13 June 2020

Climate warming accelerates temporal scaling of grassland soil microbial biodiversity

scientific article published on 25 March 2019

Climate warming enhances microbial network complexity and stability

scientific article published in 2021

Combined genomics and experimental analyses of respiratory characteristics of Shewanella putrefaciens W3-18-1

scientific article published on 28 June 2013

Comment on "The whole-soil carbon flux in response to warming".

scientific article published in February 2018

Community structure and elevational diversity patterns of soil Acidobacteria

scientific article published on 23 June 2014

Comparative Metagenomics of Freshwater Microbial Communities

Comparative analysis of differentially expressed genes in Shewanella oneidensis MR-1 following exposure to UVC, UVB, and UVA radiation

scientific article

Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

scientific article published on 31 October 2015

Complete Genome Sequence of Desulfovibrio desulfuricans IC1, a Sulfonate-Respiring Anaerobe

scientific article published on 01 August 2019

Conservation of Species- and Trait-Based Modeling Network Interactions in Extremely Acidic Microbial Community Assembly

scientific article published on 10 August 2017

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory

scientific article

Continental scale structuring of forest and soil diversity via functional traits

scientific article published on 19 August 2019

Continuous cellulosic bioethanol fermentation by cyclic fed-batch cocultivation

scientific article published on 28 December 2012

Contradictory effects of silver nanoparticles on activated sludge wastewater treatment

scientific article

Contrasting microbial functional genes in two distinct saline-alkali and slightly acidic oil-contaminated sites.

scientific article published on 3 May 2014

Contrasting responses of heterotrophic and autotrophic respiration to experimental warming in a winter annual-dominated prairie

scientific article

Contrasting soil microbial community functional structures in two major landscapes of the Tibetan alpine meadow

scientific article

Contribution of mobile genetic elements toDesulfovibrio vulgarisgenome plasticity

scientific article published on 01 September 2009

Correction to GeoChip-Based Analysis of Microbial Functional Gene Diversity in a Landfill Leachate-Contaminated Aquifer

scientific article published on 5 February 2013

Correction: Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations

scientific article published on 7 December 2017

Correction: Fruit and Soil Quality of Organic and Conventional Strawberry Agroecosystems.

scientific article published on 6 October 2010

Correction: Microbial Community Analysis of a Coastal Salt Marsh Affected by the Deepwater Horizon Oil Spill.

scientific article published on 9 November 2012

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

scientific article

Correlation of genomic and physiological traits of thermoanaerobacter species with biofuel yields

scientific article (publication date: November 2011)

Correspondence: Reply to 'Analytical flaws in a continental-scale forest soil microbial diversity study'

scientific article

Corrigendum: The energetic and carbon economic origins of leaf thermoregulation

scientific article published on 26 August 2016

Crude oil as a microbial seed bank with unexpected functional potentials

scientific article

Current Production and Metal Oxide Reduction by Shewanella oneidensis MR-1 Wild Type and Mutants.

scientific article

Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants

scientific article

DNRA and denitrification pathways are leveraged by cyclic AMP receptor protein (CRP) paralogues based on electron donor/acceptor limitation in Shewanella loihica PV-4

scientific article published on 06 November 2020

Deep-sea oil plume enriches indigenous oil-degrading bacteria

scientific article

Deforestation decreases spatial turnover and alters the network interactions in soil bacterial communities

scholarly article by Jing Tian et al published August 2018 in Soil Biology and Biochemistry

Deletion of the Desulfovibrio vulgaris carbon monoxide sensor invokes global changes in transcription

scientific article

Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils

scientific article

Design and analysis of mismatch probes for long oligonucleotide microarrays

scientific article

Detection and quantification of Geobacter lovleyi strain SZ: implications for bioremediation at tetrachloroethene- and uranium-impacted sites

scientific article

Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays

scientific article published on July 2004

Development and applications of functional gene microarrays in the analysis of the functional diversity, composition, and structure of microbial communities

article

Development and evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in Acid Mine Drainages and bioleaching systems

scientific article

Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications

scientific article published in December 2004

Development of HuMiChip for functional profiling of human microbiomes

scientific article

Development of a CRISPR/Cas9n-based tool for metabolic engineering of Pseudomonas putida for ferulic acid-to-polyhydroxyalkanoate bioconversion

scientific article published on 05 March 2020

Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities.

scientific article

Development of functional gene microarrays for microbial community analysis.

scientific article

Development of highly fluorescent silica nanoparticles chemically doped with organic dye for sensitive DNA microarray detection.

scientific article

Different influences of DNA purity indices and quantity on PCR-based DGGE and functional gene microarray in soil microbial community study

scientific article

Differential Regulation of the Two Ferrochelatase Paralogues in Shewanella loihica PV-4 in Response to Environmental Stresses

scientific article

Differential gene content and gene expression for bacterial evolution and speciation of Shewanella in terms of biosynthesis of heme and heme-requiring proteins

scientific article published on 30 July 2019

Differential responses of soil organic carbon fractions to warming: Results from an analysis with data assimilation

article

Differentiation strategies of soil rare and abundant microbial taxa in response to changing climatic regimes

scientific article published on 27 February 2020

Dissimilar responses of fungal and bacterial communities to soil transplantation simulating abrupt climate changes

scientific article published on 01 April 2019

Distance-Decay Relationship for Biological Wastewater Treatment Plants

scientific article

Distinct responses of soil microbial communities to elevated CO2 and O3 in a soybean agro-ecosystem

scientific article (publication date: March 2014)

Divergent Responses of Forest Soil Microbial Communities under Elevated CO2 in Different Depths of Upper Soil Layers.

scientific article published on 27 October 2017

Divergent taxonomic and functional responses of microbial communities to field simulation of aeolian soil erosion and deposition.

scientific article

Diverse metabolic and stress-tolerance pathways in chasmoendolithic and soil communities of Miers Valley, McMurdo Dry Valleys, Antarctica

scientific article

Diversity and Structure of Diazotrophic Communities in Mangrove Rhizosphere, Revealed by High-Throughput Sequencing

scientific article published on 18 October 2017

Diversity and interactions of microbial functional genes under differing environmental conditions: insights from a membrane bioreactor and an oxidation ditch

scientific article published on 8 January 2016

Diversity of functional genes for methanotrophs in sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico

scientific article

Dockerin-containing protease inhibitor protects key cellulosomal cellulases from proteolysis in Clostridium cellulolyticum.

scientific article published on 7 January 2014

Draft Genome Sequence of Shewanella decolorationis S12, a Dye-Degrading Bacterium Isolated from a Wastewater Treatment Plant

scientific article published on 05 December 2013

Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain

scientific article

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction.

scientific article published on 10 April 2015

Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer.

scientific article

Dynamics of Microbial Community Composition and Function duringIn SituBioremediation of a Uranium-Contaminated Aquifer

article

Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer

scientific article

Ecogenomics reveals metals and land-use pressures on microbial communities in the waterways of a megacity

scientific article published on 21 January 2015

Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: Implications for disease suppression.

scientific article published on 7 May 2018

Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature

scientific article published on 18 August 2020

Effects of Nitrate Exposure on the Functional Structure of a Microbial Community in a Uranium-contaminated Aquifer

scholarly article published 17 May 2010

Effects of a strong static magnetic field on bacterium Shewanella oneidensis: an assessment by using whole genome microarray.

scientific article published in October 2005

Effects of legacy nuclear waste on the compositional diversity and distributions of sulfate-reducing bacteria in a terrestrial subsurface aquifer

scientific article

Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface

scientific article

Effects of residual organics in municipal wastewater on hydrogenotrophic denitrifying microbial communities

scientific article published on 10 March 2017

Effects of soil type and farm management on soil ecological functional genes and microbial activities

scientific article

Effects of substrate addition on soil respiratory carbon release under long-term warming and clipping in a tallgrass prairie

scientific article

Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase

scientific article published on 24 April 2015

Elevated CO and Warming Altered Grassland Microbial Communities in Soil Top-Layers

article

Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem.

scientific article

Elevated CO₂ influences microbial carbon and nitrogen cycling

scientific article (publication date: 29 May 2013)

Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities

scientific article published on 28 September 2015

Elevated carbon dioxide alters the structure of soil microbial communities

scientific article

Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments

scientific article published in 2015

Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments.

scientific article

Elevated nitrate simplifies microbial community compositions and interactions in sulfide-rich river sediments

scientific article published on 04 August 2020

Elucidation of the methanogenic potential from coalbed microbial communities amended with volatile fatty acids

scientific article published on 01 April 2017

Embracing mountain microbiome and ecosystem functions under global change

scientific article published on 25 February 2022

Empirical establishment of oligonucleotide probe design criteria

scientific article

Empirical evaluation of a new method for calculating signal-to-noise ratio for microarray data analysis

scientific article

Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis

scientific article

Energy metabolism in Desulfovibrio vulgaris Hildenborough: insights from transcriptome analysis

scientific article published in December 2007

Enhanced decomposition of stable soil organic carbon and microbial catabolic potentials by long-term field warming.

scientific article

Enhanced elementary sulfur recovery with sequential sulfate-reducing, denitrifying sulfide-oxidizing processes in a cylindrical-type anaerobic baffled reactor

scientific article published on 12 May 2015

Environmental antibiotics drives the genetic functions of resistome dynamics

scientific article published on 17 December 2019

Environmental filtering decreases with fish development for the assembly of gut microbiota

scientific article

Erosion of functional independence early in the evolution of a microbial mutualism.

scientific article

Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples

scientific article published in April 2004

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform.

scientific article

Excessive nitrogen addition accelerates N assimilation and P utilization by enhancing organic carbon decomposition in a Tibetan alpine steppe

scientific article published on 09 October 2020

Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris

scientific article published on 15 September 2020

Experimental warming accelerates positive soil priming in a temperate grassland ecosystem

scientific article published in 2024

Field and laboratory studies on the bioconversion of coal to methane in the San Juan Basin

scientific article published on 11 January 2012

Fine-tuning key parameters of an integrated reactor system for the simultaneous removal of COD, sulfate and ammonium and elemental sulfur reclamation

scientific article published on 16 December 2013

Fire affects the taxonomic and functional composition of soil microbial communities, with cascading effects on grassland ecosystem functioning

scientific article published on 26 October 2019

First investigation of the microbiology of the deepest layer of ocean crust

scientific article published in 2010

From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization

scientific article published on 13 August 2015

Fruit and soil quality of organic and conventional strawberry agroecosystems

scientific article

Function of periplasmic hydrogenases in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

scientific article published on 29 June 2007

Functional Gene Array-Based Analysis of Microbial Community Structure in Groundwaters with a Gradient of Contaminant Levels

article

Functional Gene Array-Based Ultrasensitive and Quantitative Detection of Microbial Populations in Complex Communities.

scientific article published on 18 June 2019

Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment

scientific article

Functional activity and functional gene diversity of a Cu-contaminated soil remediated by aided phytostabilization using compost, dolomitic limestone and a mixed tree stand

article

Functional biogeography as evidence of gene transfer in hypersaline microbial communities

scientific article

Functional characterization of Crp/Fnr-type global transcriptional regulators in Desulfovibrio vulgaris Hildenborough

scientific article published on 9 December 2011

Functional diversity and redundancy across fish gut, sediment and water bacterial communities

scientific article

Functional ecology of an Antarctic Dry Valley

scientific article (publication date: 28 May 2013)

Functional gene array-based analysis of microbial communities in heavy metals-contaminated lake sediments

article

Functional gene arrays-based analysis of fecal microbiomes in patients with liver cirrhosis.

scientific article

Functional gene composition, diversity and redundancy in microbial stream biofilm communities

scientific article

Functional gene differences in soil microbial communities from conventional, low-input, and organic farmlands

scientific article

Functional gene diversity of soil microbial communities from five oil-contaminated fields in China.

scientific article

Functional genomic analysis of three nitrogenase isozymes in the photosynthetic bacterium Rhodopseudomonas palustris

scientific article

Functional metagenomics of Escherichia coli O157:H7 interactions with spinach indigenous microorganisms during biofilm formation

scientific article

Functional microarray analysis of nitrogen and carbon cycling genes across an Antarctic latitudinal transect

scientific article published on 24 May 2007

Functional molecular ecological networks

scientific article

Functional potential of soil microbial communities in the maize rhizosphere

scientific article

Functional responses of methanogenic archaea to syntrophic growth

scientific article

Functional roles of CymA and NapC in reduction of nitrate and nitrite by Shewanella putrefaciens W3-18-1.

scientific article

Functional structures of soil microbial community relate to contrasting N2O emission patterns from a highly acidified forest

scientific article published on 06 April 2020

Fungal communities respond to long-term CO2 elevation by community reassembly

scientific article

Fungal diversity in permafrost and tallgrass prairie soils under experimental warming conditions

scientific article

Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium ⬇️

scientific article published on October 1, 1995

Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming

scientific article published on 29 September 2020

Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display

scientific article

Genetic Adaptation to Salt Stress in Experimental Evolution of Desulfovibrio vulgaris Hildenborough

Genetic linkage of soil carbon pools and microbial functions in subtropical freshwater wetlands in response to experimental warming

scientific article

Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

scientific article

Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site

scientific article

Genomic dynamics of full-scale temperature-phased anaerobic digestion treating waste activated sludge: Focusing on temperature differentiation

scientific article published on 04 March 2019

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

scientific article

GeoChip 3.0: A High Throughput Tool for Analyzing Microbial Community, Composition, Structure, and Functional Activity

article

GeoChip 4: a functional gene-array-based high-throughput environmental technology for microbial community analysis

scientific article

GeoChip as a metagenomics tool to analyze the microbial gene diversity along an elevation gradient

scientific article

GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping.

scientific article

GeoChip-Based Analysis of Microbial Functional Gene Diversity in a Landfill Leachate-Contaminated Aquifer

scientific article published on 23 May 2012

GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer

scientific article published on 14 July 2009

GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent

scientific article

GeoChip-based analysis of microbial community of a combined nitritation-anammox reactor treating anaerobic digestion supernatant

scientific article

GeoChip-based analysis of the functional gene diversity and metabolic potential of microbial communities in acid mine drainage.

scientific article

GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves

scientific article published on 8 November 2012

GeoChip-based analysis of the microbial community functional structures in simultaneous desulfurization and denitrification process.

scientific article published on 10 June 2014

GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes.

scientific article

Geochip-based analysis of microbial communities in alpine meadow soils in the Qinghai-Tibetan plateau

scientific article

Geochip-based functional gene analysis of anodophilic communities in microbial electrolysis cells under different operational modes

scientific article

Global diversity and biogeography of bacterial communities in wastewater treatment plants

scientific article published on 13 May 2019

Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1.

scientific article

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

scientific article

Global transcriptional profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) reduction

scientific article

Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation

scientific article

Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins

scientific article

Global transcriptome analysis of the heat shock response of Shewanella oneidensis

scientific article

Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities

scientific article

High Concentrations of the Antibiotic Spiramycin in Wastewater Lead to High Abundance of Ammonia-Oxidizing Archaea in Nitrifying Populations

scientific article

High spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer

scientific article published on 26 July 2019

High variations of methanogenic microorganisms drive full-scale anaerobic digestion process

scientific article published on 07 March 2019

High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats

scientific article

How sulphate-reducing microorganisms cope with stress: lessons from systems biology

scientific article

HuMiChip2 for strain level identification and functional profiling of human microbiomes

scientific article

Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere.

scientific article

Hybridization of Environmental Microbial Community Nucleic Acids by GeoChip

scientific article published on January 2016

Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough

scientific article published in October 2010

Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment

scientific article

Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China.

scientific article

Impact of elevated nitrate on sulfate-reducing bacteria: a comparative study of Desulfovibrio vulgaris

scientific article published on 6 May 2010

Impact of metal pollution and Thlaspi caerulescens growth on soil microbial communities.

scientific article

Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration

scientific article published on July 2010

Impacts of the Three Gorges Dam on microbial structure and potential function

scientific article

Impacts on microbial communities and cultivable isolates from groundwater contaminated with high levels of nitric acid-uranium waste.

scientific article

Improvement of cellulose catabolism in Clostridium cellulolyticum by sporulation abolishment and carbon alleviation.

scientific article published on 20 February 2014

Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications

scientific article

In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen

scientific article published in August 2007

In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations

scientific article published on 28 September 2020

Influence of bicarbonate, sulfate, and electron donors on biological reduction of uranium and microbial community composition

scientific article published on 14 September 2007

Influence of geogenic factors on microbial communities in metallogenic Australian soils.

scientific article

Integrated metagenomics and network analysis of soil microbial community of the forest timberline.

scientific article

Interconnection of Key Microbial Functional Genes for Enhanced Benzo[a]pyrene Biodegradation in Sediments by Microbial Electrochemistry.

scientific article

Isolation and characterization of Shigella flexneri G3, capable of effective cellulosic saccharification under mesophilic conditions.

scientific article

Isolation and characterization of metal-reducing thermoanaerobacter strains from deep subsurface environments of the Piceance Basin, Colorado

scientific article

Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris.

scientific article published on 14 November 2017

Knock-out of SO1377 gene, which encodes the member of a conserved hypothetical bacterial protein family COG2268, results in alteration of iron metabolism, increased spontaneous mutation and hydrogen peroxide sensitivity in Shewanella oneidensis MR-1

scientific article

Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities

scientific article published on 6 June 2014

Land use conversion increases network complexity and stability of soil microbial communities in a temperate grassland

scientific article published in 2023

Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community

scientific article

Linkages between microbial functional potential and wastewater constituents in large-scale membrane bioreactors for municipal wastewater treatment

scientific article published on 15 March 2014

Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes

scientific article published on 3 February 2016

Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils

article

Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil

scientific article published on 31 December 2014

Long-term cultivation of a stable Methylocystis-dominated methanotrophic enrichment enabling tailored production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate).

scientific article published on 3 October 2015

Long-term elevated CO2 shifts composition of soil microbial communities in a Californian annual grassland, reducing growth and N utilization potentials

scientific article published on 28 October 2018

Long-term nitrogen addition modifies microbial composition and functions for slow carbon cycling and increased sequestration in tropical forest soil

scientific article published on 01 August 2019

Long-term oil contamination increases deterministic assembly processes in soil microbes.

scientific article published in July 2015

Long-term soil transplant simulating climate change with latitude significantly alters microbial temporal turnover

scientific article

Long-term successional dynamics of microbial association networks in anaerobic digestion processes

scientific article

Long‐term elevated precipitation induces grassland soil carbon loss via microbe‐plant–soil interplay

scientific article published in 2023

Loss of microbial diversity in soils is coincident with reductions in some specialized functions.

scientific article published on 15 January 2014

Low temperature acclimation with electrical stimulation enhance the biocathode functioning stability for antibiotics detoxification.

scientific article published on 9 May 2016

Mechanisms of enhanced cellulosic bioethanol fermentation by co-cultivation of Clostridium and Thermoanaerobacter spp

scientific article published on 04 August 2011

Mechanisms of pollution induced community tolerance in a soil microbial community exposed to Cu.

scientific article published on 29 March 2014

Mechanisms of soil bacterial and fungal community assembly differ among and within islands

scientific article published on 02 December 2019

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

scientific article

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

scientific article published on 23 March 2010

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

scientific article

Metagenomic reconstruction of nitrogen cycling pathways in a CO 2 -enriched grassland ecosystem

scholarly article by Qichao Tu et al published March 2017 in Soil Biology and Biochemistry

Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem

scientific article (publication date: 2016)

Metal reduction and iron biomineralization by a psychrotolerant Fe(III)-reducing bacterium, Shewanella sp. strain PV-4

scientific article

Methodological uncertainty in estimating carbon turnover times of soil fractions

article

Methods for estimating temperature sensitivity of soil organic matter based on incubation data: A comparative evaluation

article

Methylated arsenic species in plants originate from soil microorganisms

scientific article published on 18 November 2011

Microarray transcription profiling of a Shewanella oneidensis etrA mutant

scientific article

Microarray-based analysis of changes in diversity of microbial genes involved in organic carbon decomposition following land use/cover changes

scientific article

Microarray-based analysis of microbial community RNAs by whole-community RNA amplification.

scientific article published on 10 November 2006

Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field

scientific article published on 28 August 2009

Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification

scientific article

Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico

scientific article

Microarray-based evaluation of whole-community genome DNA amplification methods

scientific article

Microarray-based functional gene analysis of soil microbial communities during ozonation and biodegradation of crude oil.

scientific article

Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness

article

Microbial Community Dynamics and Activity Link to Indigo Production from Indole in Bioaugmented Activated Sludge Systems

scientific article published on 15 September 2015

Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment

scientific article published on 19 September 2017

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

scientific article published on 20 February 2018

Microbial Interactions With Dissolved Organic Matter Drive Carbon Dynamics and Community Succession.

scientific article

Microbial Mechanisms Mediating Increased Soil C Storage under Elevated Atmospheric N Deposition.

scientific article published in April 2013

Microbial communities and arsenic biogeochemistry at the outflow of an alkaline sulfide-rich hot spring

scientific article published on 29 April 2016

Microbial communities and functional genes associated with soil arsenic contamination and the rhizosphere of the arsenic-hyperaccumulating plant Pteris vittata L

scientific article

Microbial communities biostimulated by ethanol during uranium (VI) bioremediation in contaminated sediment as shown by stable isotope probing

scholarly article published 24 June 2014

Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels

scientific article

Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill

scientific article

Microbial community assembly differs across minerals in a rhizosphere microcosm

scientific article published on 10 September 2018

Microbial community composition and functions are resilient to metal pollution along two forest soil gradients

scientific article published on 5 December 2014

Microbial community functional structure in response to antibiotics in pharmaceutical wastewater treatment systems

scientific article

Microbial community functional structures in wastewater treatment plants as characterized by GeoChip

scientific article

Microbial community structure and function of nitrobenzene reduction biocathode in response to carbon source switchover

scientific article published on 5 February 2014

Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China

scientific article published on 01 April 2018

Microbial diversity and bioremediation of a hydrocarbon-contaminated aquifer (Vega Baja, Puerto Rico).

scientific article published on September 2006

Microbial diversity and heterogeneity in sandy subsurface soils

scientific article published in March 2004

Microbial electricity generation enhances decabromodiphenyl ether (BDE-209) degradation

scientific article

Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil

scientific article

Microbial functional diversity: From concepts to applications

scientific article published on 02 October 2019

Microbial functional gene diversity with a shift of subsurface redox conditions during In Situ uranium reduction

scientific article

Microbial functional genes commonly respond to elevated carbon dioxide

scientific article published on 29 August 2020

Microbial functional structure of Montastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

scientific article published on 02 December 2009

Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters

scientific article published on 25 August 2017

Microbial functional traits are sensitive indicators of mild disturbance by lamb grazing

scientific article published on 30 January 2019

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

scientific article

Microbial mechanisms mediating increased soil C storage under elevated atmospheric N deposition

scientific article

Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping

scientific article

Microbial regulation of the soil carbon cycle: evidence from gene-enzyme relationships

scientific article published on 10 May 2016

Microbial responses to inorganic nutrient amendment overridden by warming: Consequences on soil carbon stability

article

Microbial responses to southward and northward Cambisol soil transplant

scientific article published on 26 October 2015

Microbiological characteristics in a zero-valent iron reactive barrier

scientific article published in August 2002

Microecological Koch's postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome

scientific article published on 10 March 2020

Microevolution from shock to adaptation revealed strategies improving ethanol tolerance and production in Thermoanaerobacter

scientific article published on 22 July 2013

Microscale heterogeneity of the soil nitrogen cycling microbial functional structure and potential metabolism

scientific article published on 07 December 2020

Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater

scientific article published in January 2003

Molecular diversity of 16S rRNA and gyrB genes in copper mines

scientific article

Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico

scientific article

Molecular diversity of sulfate-reducing bacteria from two different continental margin habitats

scientific article

Molecular dynamics of the Shewanella oneidensis response to chromate stress

scientific article published on 8 March 2006

Molecular ecological network analyses.

scientific article

Molecular mechanisms of water table lowering and nitrogen deposition in affecting greenhouse gas emissions from a Tibetan alpine wetland

scientific article

More functional genes and convergent overall functional patterns detected by geochip in phenanthrene-spiked soils

article

More replenishment than priming loss of soil organic carbon with additional carbon input

scientific article published in Nature Communications

Mountain biodiversity and ecosystem functions: interplay between geology and contemporary environments

scientific article published on 02 January 2020

Multiple antibiotic resistance genes distribution in ten large-scale membrane bioreactors for municipal wastewater treatment

scientific article published on 30 September 2016

Natural bacterial communities serve as quantitative geochemical biosensors

scientific article published on 12 May 2015

Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China).

scientific article

Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation

scientific article published on 14 July 2015

Niche differentiation is spatially and temporally regulated in the rhizosphere

scientific article published on 17 January 2020

NifH-Harboring Bacterial Community Composition across an Alaskan Permafrost Thaw Gradient

scientific article

Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities

scientific article published on 10 January 2022

Oral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy.

scientific article published on 16 January 2018

Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity

scientific article published on 7 April 2015

Overall functional gene diversity of microbial communities in three full-scale activated sludge bioreactors

scientific article

Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification

scientific article published on 7 February 2013

PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis

scientific article published in November 2002

Pellicle formation in Shewanella oneidensis.

scientific article

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis.

scientific article published on 19 June 2015

Phylogenetic and functional diversity of microbial communities associated with subsurface sediments of the Sonora Margin, Guaymas Basin.

scientific article

Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients

scientific article

Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2

scientific article (publication date: 2011)

Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis

scientific article

Phytomanagement Reduces Metal Availability and Microbial Metal Resistance in a Metal Contaminated Soil

scientific article published on 07 August 2020

Pilot-scale in situ bioremedation of uranium in a highly contaminated aquifer. 2. Reduction of u(VI) and geochemical control of u(VI) bioavailability

scientific article

Plant Thermoregulation: Energetics, Trait-Environment Interactions, and Carbon Economics

scientific article published on 14 October 2015

Plant-microbe networks in soil are weakened by century-long use of inorganic fertilizers

scientific article published on 19 September 2019

Planting increases the abundance and structure complexity of soil core functional genes relevant to carbon and nitrogen cycling

scientific article published on 23 September 2015

Precise promoter integration improves cellulose bioconversion and thermotolerance in Clostridium cellulolyticum

scientific article published on 12 April 2020

Predicting taxonomic and functional structure of microbial communities in acid mine drainage.

scientific article published on 04 March 2016

Preliminary analysis of salivary microbiome and their potential roles in oral lichen planus

scientific article

Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses.

scientific article

Production of Nitrous Oxide from Nitrite in Stable Type II Methanotrophic Enrichments.

scientific article published on 24 August 2015

Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance

scientific article published on 07 January 2020

Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts

scientific article

Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes

scientific article

Random sampling process leads to overestimation of β-diversity of microbial communities

scientific article

Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.

scientific article

Recovery of temperate Desulfovibrio vulgaris bacteriophage using a novel host strain

scientific article published in November 2006

Reduction of microbial diversity in grassland soil is driven by long-term climate warming

scientific article published in 2022

Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA.

scientific article published on 23 April 2009

Regional and global elevational patterns of microbial species richness and evenness

article

Reproducibility and quantitation of amplicon sequencing-based detection

scientific article

Resistance potential of soil bacterial communities along a biodiversity gradient in forest ecosystems

scientific article published in 2022

Response of Desulfovibrio vulgaris to alkaline stress

scientific article

Response of chloramphenicol-reducing biocathode resistome to continuous electrical stimulation

scientific article published on 30 October 2018

Responses of Aromatic-Degrading Microbial Communities to Elevated Nitrate in Sediments.

scientific article published on 21 September 2015

Responses of microbial communities to single-walled carbon nanotubes in phenol wastewater treatment systems

scientific article published on 13 March 2015

Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation

scientific article published on 18 March 2010

Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland

scientific article published on 27 November 2012

Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths

scientific article published on 08 July 2019

Revisiting Modes of energy generation in sulfate reducing bacteria

Roles of UndA and MtrC of Shewanella putrefaciens W3-18-1 in iron reduction

scientific article

Root exudates drive soil-microbe-nutrient feedbacks in response to plant growth

scientific article published on 26 October 2020

RpoN (σ54) Is Required for Floc Formation but Not for Extracellular Polysaccharide Biosynthesis in a Floc-Forming Aquincola tertiaricarbonis Strain

scientific article published on 12 May 2017

Saliva microbiota carry caries-specific functional gene signatures

scientific article

Salivary mycobiome dysbiosis and its potential impact on bacteriome shifts and host immunity in oral lichen planus

scientific article published on 02 July 2019

Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach

scientific article

Scale-dependent effects of climate and geographic distance on bacterial diversity patterns across northern China's grasslands.

scientific article published on 29 October 2015

Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation.

scientific article

Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production

scientific article

Sequestering uranium and technetium through co-precipitation with aluminum in a contaminated acidic environment.

scientific article published in October 2009

Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean

scientific article

Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments

scientific article

Shifts in the phylogenetic structure and functional capacity of soil microbial communities follow alteration of native tussock grassland ecosystems

scholarly article by Steven A. Wakelin et al published February 2013 in Soil Biology and Biochemistry

Shifts of functional gene representation in wheat rhizosphere microbial communities under elevated ozone

scientific article published on 15 November 2012

Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska

scientific article

Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach

scientific article

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity

scientific article published on 06 April 2020

Snapshot of iron response in Shewanella oneidensis by gene network reconstruction

scientific article

Soil aggregate size mediates the impacts of cropping regimes on soil carbon and microbial communities

article

Soil bacterial diversity patterns and drivers along an elevational gradient on Shennongjia Mountain, China

scientific article published on 29 May 2015

Soil bacterial endemism and potential functional redundancy in natural broadleaf forest along a latitudinal gradient

scientific article published on 30 June 2016

Soil enzymes as indicators of soil function: A step toward greater realism in microbial ecological modeling

scientific article published on 14 December 2021

Soil genomics

scientific article published on 03 August 2009

Soil microbial community responses to a decade of warming as revealed by comparative metagenomics

scientific article

Soil organic matter availability and climate drive latitudinal patterns in bacterial diversity from tropical to cold temperate forests

scientific article published in 2017

Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests.

scientific article published on 12 September 2015

Soil properties control decomposition of soil organic carbon: Results from data-assimilation analysis

article

Spatial and resource factors influencing high microbial diversity in soil

scientific article

Spatial scaling of forest soil microbial communities across a temperature gradient

scientific article published on 02 September 2018

Spatial scaling of functional gene diversity across various microbial taxa.

scientific article

Stimulation of soil respiration by elevated CO<sub>2</sub> is enhanced under nitrogen limitation in a decade-long grassland study

scientific article published on 14 December 2020

Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community

scientific article

Stochasticity in microbiology: managing unpredictability to reach the Sustainable Development Goals

scientific article published on 20 April 2020

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

scientific article

Strain/species identification in metagenomes using genome-specific markers

scientific article published on 12 February 2014

Strain/species-specific probe design for microbial identification microarrays

scientific article published on 07 June 2013

StressChip as a high-throughput tool for assessing microbial community responses to environmental stresses

scientific article

Structure and regulation of the cellulose degradome in Clostridium cellulolyticum

scientific article (publication date: 8 May 2013)

Succession of microbial functional communities in response to a pilot-scale ethanol-blended fuel release throughout the plume life cycle

scientific article published on 17 January 2015

Succession of the bacterial community and dynamics of hydrogen producers in a hydrogen-producing bioreactor

scientific article

Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons

scientific article published on 4 August 2015

Successional change in species composition alters climate sensitivity of grassland productivity

article

Synergistic epistasis enhances the co-operativity of mutualistic interspecies interactions

scientific article published on 21 February 2021

Targeted assemblies of cas1 suggest CRISPR-Cas's response to soil warming

scientific article published on 27 March 2020

Taxonomic and Functional Analyses of the Supragingival Microbiome from Caries-Affected and Caries-Free Hosts.

scientific article published on 20 September 2017

Taxonomic and Functional Diversity of Soil and Hypolithic Microbial Communities in Miers Valley, McMurdo Dry Valleys, Antarctica

scientific article published on 20 October 2016

Taxonomic and Functional Responses of Soil Microbial Communities to Annual Removal of Aboveground Plant Biomass.

scientific article

Taxonomic decomposition of the latitudinal gradient in species diversity of North American floras

article published in 2017

Temperature mediates continental-scale diversity of microbes in forest soils.

scientific article

Temperature sensitivity of organic matter decomposition of permafrost-region soils during laboratory incubations

article

Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.

scientific article published on 23 January 2017

Temporal changes in global soil respiration since 1987

scientific article published on 15 January 2021

The Biogeographic Pattern of Microbial Functional Genes along an Altitudinal Gradient of the Tibetan Pasture

scientific article

The Composition and Spatial Patterns of Bacterial Virulence Factors and Antibiotic Resistance Genes in 19 Wastewater Treatment Plants

scientific article

The Diversity and Co-occurrence Patterns of N₂-Fixing Communities in a CO₂-Enriched Grassland Ecosystem

scientific article published on 18 August 2015

The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities

scientific article published on 13 June 2013

The Shifts of Diazotrophic Communities in Spring and Summer Associated with Coral Galaxea astreata, Pavona decussata, and Porites lutea

scientific article

The Thermoanaerobacter glycobiome reveals mechanisms of pentose and hexose co-utilization in bacteria

scientific article

The effects of silver nanoparticles on intact wastewater biofilms

scientific article published on 6 July 2015

The electron transfer system of syntrophically grown Desulfovibrio vulgaris

scientific article published on 06 July 2009

The energetic and carbon economic origins of leaf thermoregulation

scientific article

The functional gene composition and metabolic potential of coral-associated microbial communities

scientific article

The interactive effects of soil transplant into colder regions and cropping on soil microbiology and biogeochemistry

scientific article

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

scientific article published on 6 June 2016

The microbe-mediated mechanisms affecting topsoil carbon stock in Tibetan grasslands

scientific article published on 17 February 2015

The microbial gene diversity along an elevation gradient of the Tibetan grassland.

scientific article

The microbial network property as a bio-indicator of antibiotic transmission in the environment

scientific article published on 14 November 2020

The microbially mediated soil organic carbon loss under degenerative succession in an alpine meadow

scientific article

The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill

scientific article

The shifts of sediment microbial community phylogenetic and functional structures during chromium (VI) reduction

scientific article published on 16 September 2016

The tricarboxylic acid cycle in Shewanella oneidensis is independent of Fur and RyhB control

scientific article

Thermal disruption of soil bacterial assemblages decreases diversity and assemblage similarity

scientific article published in 2019

Transcript profiles of Nitrosomonas europaea during growth and upon deprivation of ammonia and carbonate

scientific article published on 01 April 2006

Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress

scientific article

Transcriptional response of Desulfatibacillum alkenivorans AK-01 to growth on alkanes: insights from RT-qPCR and microarray analyses

scientific article published on 23 March 2016

Transcriptional response of Desulfovibrio vulgaris Hildenborough to oxidative stress mimicking environmental conditions

scientific article published on 05 December 2007

Transcriptome analysis applied to survival of Shewanella oneidensis MR-1 exposed to ionizing radiation

scientific article

Transcriptome analysis of Shewanella oneidensis MR-1 in response to elevated salt conditions

scientific article

Transcriptome analysis of pellicle formation of Shewanella oneidensis

scientific article

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation

scholarly article

Transcriptome of a Nitrosomonas europaea mutant with a disrupted nitrite reductase gene (nirK).

scientific article

Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH.

scientific article

Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis

scientific article

Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon

scientific article published on 05 August 2019

Ubiquity of polystyrene digestion and biodegradation within yellow mealworms, larvae of Tenebrio molitor Linnaeus (Coleoptera: Tenebrionidae)

scholarly article by Shan-Shan Yang published in August 2018

Ultrasound-mediated DNA transformation in thermophilic gram-positive anaerobes.

scientific article

Use of functional gene arrays for elucidating in situ biodegradation.

scientific article

Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition.

scientific article published on 20 March 2018

Use of microarrays with different probe sizes for monitoring gene expression.

scientific article

Variability in soil properties at different spatial scales (1m–1km) in a deciduous forest ecosystem

Variations of Soil Microbial Community Structures Beneath Broadleaved Forest Trees in Temperate and Subtropical Climate Zones

scientific article published on 10 February 2017

Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning

scientific article

Warming enhances old organic carbon decomposition through altering functional microbial communities

scientific article

Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community

scientific article published on 17 January 2020

Widespread distribution of soluble di-iron monooxygenase (SDIMO) genes in Arctic groundwater impacted by 1,4-dioxane

scientific article published on 16 August 2013

Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria

scientific article published on 05 June 2020

Winter warming rapidly increases carbon degradation capacities of fungal communities in tundra soil: potential consequences on carbon stability

scientific article published on 10 December 2020

Zonal Soil Type Determines Soil Microbial Responses to Maize Cropping and Fertilization

scientific article published on 12 July 2016

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