List of works by Richard P. M. A. Crooijmans

2003 Spring meeting of the WPSA French Branch

article

A Complex Structural Variation on Chromosome 27 Leads to the Ectopic Expression of HOXB8 and the Muffs and Beard Phenotype in Chickens

scientific article

A Novel Loss-of-Function Variant in Transmembrane Protein 263 (TMEM263) of Autosomal Dwarfism in Chicken.

scientific article published on 7 June 2018

A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the turkey and chicken genomes

scientific article

A chondrogenesis-related lipocalin cluster includes a third new gene, CALgamma

scientific article

A comparative map of chicken chromosome 24 and human chromosome 11.

scientific article

A comprehensive microsatellite linkage map of the chicken genome

scientific article published in April 1998

A genetic linkage map for the South African Angora goat

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

scientific article

A genome-wide association study on androstenone levels in pigs reveals a cluster of candidate genes on chromosome 6.

scientific article

A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate

scientific article published on 16 December 2008

A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs

scientific article

A high-resolution radiation hybrid map of chicken chromosome 5 and comparison with human chromosomes

scientific article

A history of hybrids? Genomic patterns of introgression in the True Geese

scientific article

A new chicken 55K SNP genotyping array

scientific article published on 22 May 2019

A novel activating chicken IgY FcR is related to leukocyte receptor complex (LRC) genes but is located on a chromosomal region distinct from the LRC and FcR gene clusters

scientific article

A physical map of the chicken genome

scientific article

A radiation hybrid map of chicken Chromosome 4.

scientific article

A radiation hybrid map of chicken chromosome 15.

scientific article published in February 2004

A tree of geese: A phylogenomic perspective on the evolutionary history of True Geese

scientific article

ALC (adjacent to LMX1 in chick) is a novel dorsal limb mesenchyme marker

scientific article published on 01 December 2003

Adaptive introgression from indicine cattle into white cattle breeds from Central Italy

scientific article published on 28 January 2020

Admixture between released and wild game birds: a changing genetic landscape in European mallards (Anas platyrhynchos)

Analyses of pig genomes provide insight into porcine demography and evolution

scientific article

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

scientific article published on 12 August 2019

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome.

scientific article published on 12 August 2009

Artificial selection on introduced Asian haplotypes shaped the genetic architecture in European commercial pigs

article

Assessing the contribution of breeds to genetic diversity in conservation schemes.

scientific article published in September 2002

Assignment of FUT8 to chicken chromosome band 5q1.4 and to human chromosome 14q23.2-->q24.1 by in situ hybridization. Conserved and compared synteny between human and chicken

scientific article

Biodiversity of 52 chicken populations assessed by microsatellite typing of DNA pools

scientific article

Biodiversity of pig breeds from China and Europe estimated from pooled DNA samples: differences in microsatellite variation between two areas of domestication

scientific article

CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes

scientific article published on 01 February 2020

CNVs are associated with genomic architecture in a songbird.

scientific article published on 13 March 2018

Centromere positions in chicken and Japanese quail chromosomes: de novo centromere formation versus pericentric inversions

scientific article published in December 2012

Chicken Ig-like receptor B2, a member of a multigene family, is mainly expressed on B lymphocytes, recruits both Src homology 2 domain containing protein tyrosine phosphatase (SHP)-1 and SHP-2, and inhibits proliferation

scientific article

Chromosomal assignment of chicken clone contigs by extending the consensus linkage map

scientific article published on 01 June 2005

Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions

scientific article

Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis

scientific article published on 5 August 2009

Comparative map between chicken chromosome 15 and human chromosomal region 12q24 and 22q11-q12.

scientific article published in September 2003

Comparative mapping of human Chromosome 19 with the chicken shows conserved synteny and gives an insight into chromosomal evolution

scientific article published on 01 June 2002

Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken

scientific article

Conservation genomic analysis of domestic and wild pig populations from the Iberian Peninsula

scientific article

Copy number variation in the speciation of pigs: a possible prominent role for olfactory receptors

scientific article published on 22 April 2015

Copy number variations in Friesian horses and genetic risk factors for insect bite hypersensitivity

scientific article published on 30 July 2018

Correction to: Genome-wide SNP data unveils the globalization of domesticated pigs

scientific article published on 04 June 2020

Correction: Design and Characterization of a 52K SNP Chip for Goats

scientific article published on 24 March 2016

Cytogenetics, conserved synteny and evolution of chicken fucosyltransferase genes compared to human.

scientific article published in January 2003

Deciphering the patterns of genetic admixture and diversity in southern European cattle using genome-wide SNPs

scientific article published on 08 February 2019

Design and characterization of a 52K SNP chip for goats

scientific article published on 22 January 2014

Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology

scientific article

Detection and localization of quantitative trait loci affecting fatness in broilers

scientific article published on 01 March 2004

Detection of QTL for immune response to sheep red blood cells in laying hens

article

Detection of QTL for innate: Non-specific antibody levels binding LPS and LTA in two independent populations of laying hens

article

Detection of different quantitative trait loci for antibody responses to keyhole lympet hemocyanin and Mycobacterium butyricum in two unrelated populations of laying hens

scientific article published in December 2003

Developing microsatellite markers from cDNA: a tool for adding expressed sequence tags to the genetic linkage map of the chicken

scientific article

Development and mapping of polymorphic microsatellite markers derived from a chicken brain cDNA library

scientific article published on August 1996

Development of 112 unique expressed sequence tags from chicken liver using an arbitrarily primed reverse transcriptase-polymerase chain reaction and single strand conformation gel purification method

scientific article

Development of a genetic tool for product regulation in the diverse British pig breed market

scientific article

Development of a single nucleotide polymorphism map of porcine chromosome 2.

scientific article published in December 2003

Distinguishing migration events of different timing for wild boar in the Balkans

Distribution and Functionality of Copy Number Variation across European Cattle Populations

scientific article published on 23 August 2017

ESTIMATION OF THE EXTENT OF LINKAGE DISEQUILIBRIUM IN SEVEN REGIONS OF THE PORCINE GENOME.

scientific article published in January 2005

Early and late feathering in turkey and chicken: same gene but different mutations.

scientific article published on 22 March 2018

East Asian contributions to Dutch traditional and western commercial chickens inferred from mtDNA analysis.

scientific article published on 10 December 2010

Editorial: Global green strategies and capacities to manage a sustainable animal biodiversity

scientific article published in 2023

Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes

scientific article

Evolution of Tibetan wild boars

scientific article

Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication

scientific article

Evolutionary signals of selection on cognition from the great tit genome and methylome.

scientific article published on 25 January 2016

Extending the chicken-human comparative map by placing 15 genes on the chicken linkage map

article

Extent of linkage disequilibrium in chicken

scientific article published on 01 January 2007

FISH mapping of 57 BAC clones reveals strong conservation of synteny between Galliformes and Anseriformes

scientific article published on 01 June 2007

FISH on avian lampbrush chromosomes produces higher resolution gene mapping

article

Farm-by-farm analysis of microsatellite, mtDNA and SNP genotype data reveals inbreeding and crossbreeding as threats to the survival of a native Spanish pig breed

scientific article

First report on chicken genes and chromosomes 2000.

scientific article

Fragmentation and Translocation Distort the Genetic Landscape of Ungulates: Red Deer in the Netherlands

scientific article published in 2020

Functional genes mapped on the chicken genome.

scientific article

GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes

scientific article published on 24 July 2016

Gene expression in chicken reveals correlation with structural genomic features and conserved patterns of transcription in the terrestrial vertebrates

scientific article

Genetic consequences of breaking migratory traditions in barnacle geese Branta leucopsis.

scientific article published on 7 November 2013

Genetic diversity of Nile tilapia (Oreochromis niloticus) throughout West Africa

scientific article published on 14 November 2019

Genetic diversity of Vietnamese domestic chicken populations as decision-making support for conservation strategies

scientific article published on 28 May 2013

Genetic mapping of quantitative trait loci affecting susceptibility in chicken to develop pulmonary hypertension syndrome

scientific article published on 01 December 2005

Genetic origin, admixture and population history of aurochs (Bos primigenius) and primitive European cattle

scientific article published on 28 September 2016

Genetic origin, admixture and population history of aurochs (Bos primigenius) and primitive European cattle

scientific article published on 11 October 2017

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

scientific article (publication date: 2013)

Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos).

scientific article

Genome-Wide Assessment of DNA Methylation in Chicken Cardiac Tissue Exposed to Different Incubation Temperatures and CO2 Levels

scientific article published on 28 October 2020

Genome-Wide Characterization of Selection Signatures and Runs of Homozygosity in Ugandan Goat Breeds

scholarly article by Robert B Onzima et al published 2018 in Frontiers in Genetics

Genome-wide SNP data unveils the globalization of domesticated pigs. ⬇️

scientific article published on 21 September 2017

Genome-wide SNP detection in the great tit Parus major using high throughput sequencing.

scientific article

Genome-wide assessment of worldwide chicken SNP genetic diversity indicates significant absence of rare alleles in commercial breeds.

scientific article

Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA.

scientific article

Genome-wide population structure and admixture analysis reveals weak differentiation among Ugandan goat breeds.

scientific article published on 17 January 2018

Genome-wide single nucleotide polymorphism (SNP) identification and characterization in a non-model organism, the African buffalo (Syncerus caffer), using next generation sequencing

article

Genome-wide single nucleotide polymorphism analysis reveals recent genetic introgression from domestic pigs into Northwest European wild boar populations

scientific article

Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression

scientific article

Genomic diversity and differentiation of a managed island wild boar population

scientific article

Genomic relatedness and diversity of Swedish native cattle breeds

scientific article published on 02 October 2019

Heterogeneity of a dwarf phenotype in Dutch traditional chicken breeds revealed by genomic analyses

scientific article published on 19 January 2021

Highly polymorphic microsatellite markers in poultry.

scientific article published on December 1993

Hybrid origin of European commercial pigs examined by an in-depth haplotype analysis on chromosome 1.

scientific article

Identification of QTLs involved in open-field behavior in young and adult laying hens

Identification of QTLs involved in open-field behavior in young and adult laying hens.

scientific article published in May 2004

Identification of high utility SNPs for population assignment and traceability purposes in the pig using high-throughput sequencing

scientific article published on 25 April 2011

Identification of quantitative trait loci for receiving pecks in young and adult laying hens

scientific article published on 01 November 2003

Improvement of the comparative map of chicken chromosome 13.

scientific article

Integration of chicken genomic resources to enable whole-genome sequencing.

scientific article published in January 2003

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey

scientific article

Large scale variation in DNA copy number in chicken breeds

scientific article

Linkage disequilibrium decay and haplotype block structure in the pig.

scientific article published on May 2008

Mapping quantitative trait loci affecting feather pecking behavior and stress response in laying hens

scientific article published in August 2003

Mapping the naked neck (NA) and polydactyly (PO) mutants of the chicken with microsatellite molecular markers

scientific article published on January 2000

Marine stepping-stones: Connectivity of Mytilus edulis populations between offshore energy installations

scientific article published on 11 February 2020

Mating systems and male reproductive success in Nile tilapia (Oreochromis niloticus) in breeding hapas: A microsatellite analysis

Maximum longevity and juvenile mortality in zoo‐housed mangabeys

scientific article published in 2022

Microsatellite markers in common carp (Cyprinus carpio L.)

Microsatellite polymorphism in commercial broiler and layer lines estimated using pooled blood samples

scientific article published on 01 July 1996

Mining for single nucleotide polymorphisms in pig genome sequence data

scientific article

Molecular cytogenetic definition of the chicken genome: the first complete avian karyotype.

scientific article

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

scientific article published in 2010

Multicolour fluorescent detection and mapping of AFLP markers in chicken (Gallus domesticus)

scientific article published on 01 August 1999

New microsatellite markers in chicken optimized for automated fluorescent genotyping

scientific article

New microsatellite markers on the linkage map of the chicken genome

scientific article published on September 1994

On the relationship between an Asian haplotype on chromosome 6 that reduces androstenone levels in boars and the differential expression of SULT2A1 in the testis.

scientific article published on 09 January 2014

Ontogeny of the avian intestinal immunoglobulin repertoire: modification in CDR3 length and conserved VH-pseudogene usage.

scientific article published on 05 September 2013

Parallel genetic origin of foot feathering in birds

scientific article published on 28 April 2020

Partial duplication of the PRLR and SPEF2 genes at the late feathering locus in chicken.

scientific article

Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics

scientific article (publication date: April 2013)

Porcine BAC derived microsatellites linked to ADRBK1, CNTF and GAL on SSC2.

scientific article published in February 2002

Porcine colonization of the Americas: a 60k SNP story.

scientific article published on 19 December 2012

Precise centromere positioning on chicken chromosome 3.

scientific article published on 3 July 2010

Preliminary linkage map of the chicken (Gallus domesticus) genome based on microsatellite markers: 77 new markers mapped

scientific article published in June 1996

QTL Mapping in chicken using a three generation full sib family structure of an extreme broiler X broiler cross

QTL for mohair traits in South African Angora goats

Quantitative trait loci associated with pre-weaning growth in South African Angora goats

Quantitative trait loci for behavioural traits in chickens

Quantitative trait loci for body weight in layers differ from quantitative trait loci specific for antibody responses to sheep red blood cells

scientific article published in June 2004

RNA-Seq Analysis Reveals Hub Genes Involved in Chicken Intramuscular Fat and Abdominal Fat Deposition During Development

scientific article published on 28 August 2020

Regional differences in recombination hotspots between two chicken populations

scientific article

Regional regulation of transcription in the chicken genome

scientific article

Regions of homozygosity in the porcine genome: consequence of demography and the recombination landscape

scientific article

Reintroductions and genetic introgression from domestic pigs have shaped the genetic population structure of Northwest European wild boar

scientific article

Replicated high-density genetic maps of two great tit populations reveal fine-scale genomic departures from sex-equal recombination rates.

scientific article published on 23 October 2013

Review of the initial validation and characterization of a 3K chicken SNP array

article

SNP marker detection and genotyping in tilapia

scientific article published on 24 April 2012

Second report on chicken genes and chromosomes 2005

article

Segregation distortion in chicken and the evolutionary consequences of female meiotic drive in birds.

scientific article published on 27 January 2010

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

scientific article

Sequencing and genomic annotation of the chicken (Gallus gallus) Hox clusters, and mapping of evolutionarily conserved regions

scientific article (publication date: 2007)

Signatures of diversifying selection in European pig breeds.

scientific article

Signatures of selection in the genomes of commercial and non-commercial chicken breeds

scientific article (publication date: 2012)

TRES: Identification of Discriminatory and Informative SNPs from Population Genomic Data

scientific article

The Genomic Complexity of a Large Inversion in Great Tits

scientific article published on 01 July 2019

The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons).

scientific article published on 16 March 2016

The design and cross-population application of a genome-wide SNP chip for the great tit Parus major.

scientific article published on 5 April 2012

The development and characterization of a 60K SNP chip for chicken.

scientific article

The development of a genome wide SNP set for the Barnacle goose Branta leucopsis.

scientific article published on 10 July 2012

The distal end of porcine chromosome 6p is involved in the regulation of skatole levels in boars ⬇️

scientific article

The duck genome and transcriptome provide insight into an avian influenza virus reservoir species

scientific article

The effects of recent changes in breeding preferences on maintaining traditional Dutch chicken genomic diversity

scientific article published on 28 March 2018

The gene orders on human chromosome 15 and chicken chromosome 10 reveal multiple inter- and intrachromosomal rearrangements

scientific article published on 01 November 2001

The type of bottleneck matters: Insights into the deleterious variation landscape of small managed populations

scientific article published on 30 September 2019

The use of blood gas parameters to predict ascites susceptibility in juvenile broilers.

scientific article published on August 2010

Third Report on Chicken Genes and Chromosomes 2015.

scientific article published on 14 July 2015

Time Course Transcriptomic Study Reveals the Gene Regulation During Liver Development and the Correlation With Abdominal Fat Weight in Chicken

scientific article published on 10 September 2021

Two-dimensional screening of the Wageningen chicken BAC library

scientific article

Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations

scientific article

Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations

scientific article published on 10 June 2015

Whole genome QTL mapping for growth, meat quality and breast meat yield traits in turkey.

scientific article

Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo).

scientific article

Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution

scientific article

Whole genome scan for quantitative trait loci affecting body weight in chickens using a three generation design

article by J.B.C.H.M. van Kaam et al published May 1998 in Livestock Science

Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds

scientific article

Widespread horizontal genomic exchange does not erode species barriers among sympatric ducks

scientific article

Paulina is supported by:

About Paulina

Help