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List of works by Hong Cui

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

scientific article published on 17 January 2013

Annotation of phenotypes using ontologies: a Gold Standard for the training and evaluation of natural language processing systems

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

scientific article published on 01 January 2018

Applications of natural language processing in biodiversity science

scientific article (publication date: 2012)

Author-Driven Computable Data and Ontology Production for Taxonomists

scientific article

Authors’ attitude toward adopting a new workflow to improve the computability of phenotype publications

scientific article published on 11 January 2022

Bringing a Semantic MediaWiki Flora to Life

scientific article published in 2018

Building the "Plant Glossary"—A controlled botanical vocabulary using terms extracted from the Floras of North America and China

article

CharaParser+EQ: Performance evaluation without gold standard

article by Hong Cui et al published 2015 in Proceedings of the Association for Information Science and Technology

Extraction of phenotypic traits from taxonomic descriptions for the tree of life using natural language processing.

scientific article

Finding our way through phenotypes

scientific article

Incentivising use of structured language in biological descriptions: Author-driven phenotype data and ontology production

scientific article published on 07 November 2018

Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

scientific article

Measurement Recorder: developing a useful tool for making species descriptions that produces computable phenotypes

scientific article published on 01 November 2020

MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions

scientific article

Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources

scientific article

Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier

scientific article published on 28 November 2018

Next-generation phenomics for the Tree of Life

scientific article (publication date: 26 June 2013)

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

scientific article

OTO: Ontology Term Organizer

scientific article

Preliminary Findings of Usability Studies on an Ontology-Aware Taxon-by-Character Matrix Editor

scientific article published in 2022

Resolving "orphaned" non-specific structures using machine learning and natural language processing methods

scientific article published on 10 August 2018

Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study

scholarly article published on 22 June 2021

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