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List of works by Lenwood S Heath

A Machine Learning Approach to Predict Gene Regulatory Networks in Seed Development in Arabidopsis

scientific article published on 23 December 2016

A Network of SCOP Hidden Markov Models and Its Analysis ⬇️

scientific article published on May 23, 2011

A Proposal for a Genome Similarity-Based Taxonomy for Plant-Pathogenic Bacteria that Is Sufficiently Precise to Reflect Phylogeny, Host Range, and Outbreak Affiliation Applied to Pseudomonas syringae sensu lato as a Proof of Concept

scientific article published on 23 August 2016

A Theoretical Model for Whole Genome Alignment ⬇️

scientific article published on January 6, 2011

A proposal for a portal to make earth's microbial diversity easily accessible and searchable

scientific article

A system to automatically classify and name any individual genome-sequenced organism independently of current biological classification and nomenclature

scientific article

Beacon Editor: Capturing Signal Transduction Pathways Using the Systems Biology Graphical Notation Activity Flow Language.

scientific article published on 28 August 2017

CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining

scientific article

Changes in RNA Splicing in Developing Soybean (Glycine max) Embryos

scientific article

Characterization of protein-protein interactions between rice viruses and vector insects

scientific article published on 14 June 2020

ClaMS: A Classifier for Metagenomic Sequences

scientific article

Clustering mass spectrometry data using order statistics

scientific article published in September 2003

CoSREM: a graph mining algorithm for the discovery of combinatorial splicing regulatory elements

scientific article published on 4 September 2015

Comparing Queues and Stacks As Machines for Laying Out Graphs

Comparing time series transcriptome data between plants using a network module finding algorithm

scientific article published on 01 June 2019

Computational Identification of Tissue-Specific Splicing Regulatory Elements in Human Genes from RNA-Seq Data

scientific article

Cyberbiosecurity Challenges of Pathogen Genome Databases

scientific article published on 15 May 2019

DeNovo: virus-host sequence-based protein-protein interaction prediction.

scientific article

DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data

scientific article published in February 2018

Differential expression of heat shock protein genes in preconditioning for photosynthetic acclimation in water-stressed loblolly pine

scientific article

Early PLDalpha-mediated events in response to progressive drought stress in Arabidopsis: a transcriptome analysis.

scientific article published on January 2007

Effect of antibiotic use and composting on antibiotic resistance gene abundance and resistome risks of soils receiving manure-derived amendments

scientific article published on 03 May 2019

Effects of chronic ozone exposure on gene expression in Arabidopsis thaliana ecotypes and in Thellungiella halophila

scientific article published on May 2006

Embedding Outerplanar Graphs in Small Books

Evidence for extensive heterotrophic metabolism, antioxidant action, and associated regulatory events during winter hardening in Sitka spruce ⬇️

scientific article published on April 30, 2013

Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data

scientific article

H++: a server for estimating pKas and adding missing hydrogens to macromolecules

scientific article

Human microRNAs targeting hepatitis C virus

Identification of regulatory modules in genome scale transcription regulatory networks

scientific article published on 15 December 2017

Identifying splicing regulatory elements with de Bruijn graphs

scientific article published in December 2014

LINbase: a web server for genome-based identification of prokaryotes as members of crowdsourced taxa

scientific article published on 30 March 2020

LINflow: a computational pipeline that combines an alignment-free with an alignment-based method to accelerate generation of similarity matrices for prokaryotic genomes

scientific article published on 24 March 2021

Laying Out Graphs Using Queues

scientific article (publication date: October 1992)

MCAT: Motif Combining and Association Tool

scientific article published on 10 November 2018

Meta-analysis of the Ralstonia solanacearum species complex (RSSC) based on comparative evolutionary genomics and reverse ecology

scientific article published in 2022

MetaCompare: a computational pipeline for prioritizing environmental resistome risk.

scientific article

MetaStorm: A Public Resource for Customizable Metagenomics Annotation

scientific article

Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos

scientific article published on 14 May 2013

Metagenomic profiling of historic Colorado Front Range flood impact on distribution of riverine antibiotic resistance genes

scientific article published on 05 December 2016

MicroTarget: MicroRNA target gene prediction approach with application to breast cancer.

scientific article published on 2 May 2017

Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis) ⬇️

scientific article published on October 29, 2012

Mining for meaning: visualization approaches to deciphering Arabidopsis stress responses in roots and shoots.

scientific article published on 14 March 2012

Molecular and physiological adaptation to prolonged drought stress in the leaves of two Andean potato genotypes

scientific article published on 01 October 2008

Multimodal networks: structure and operations

scientific article published on April 2009

Order-preserving minimal perfect hash functions and information retrieval

PEAK: Integrating Curated and Noisy Prior Knowledge in Gene Regulatory Network Inference

scientific article

Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine.

scientific article

Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos.

scientific article

REGEN: Ancestral Genome Reconstruction for Bacteria

scientific article published on 18 July 2012

Response diversity of Arabidopsis thaliana ecotypes in elevated [CO2] in the field

scientific article published on 29 August 2006

Role of superoxide dismutases (SODs) in controlling oxidative stress in plants

scientific article published in May 2002

Semantics of multimodal network models.

scientific article published on April 2009

Similarity-based codes sequentially assigned to ebolavirus genomes are informative of species membership, associated outbreaks, and transmission chains

scientific article published on January 2015

Sorting by short swaps

scientific article

Strain-Level Identification of Bacterial Tomato Pathogens Directly from Metagenomic Sequences

scientific article published on 25 February 2020

Studying the functional genomics of stress responses in loblolly pine with the Expresso microarray experiment management system

scientific article published on January 2002

The pagenumber of k-trees is O(k)

scientific article (publication date: May 2001)

The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison

scientific article published on 20 April 2006

Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

scientific article published on 14 November 2015

Tuber development phenotypes in adapted and acclimated, drought-stressed Solanum tuberosum ssp. andigena have distinct expression profiles of genes associated with carbon metabolism.

scientific article published on 26 October 2007

Using relative importance methods to model high-throughput gene perturbation screens.

scientific article

XcisClique: analysis of regulatory bicliques

scientific article published on 21 April 2006

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