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List of works by Andreas Tauch

5.2 Functional -Omics for Cell Lines and Processes: The -Omics Technologies on the Example of CHO Cells

A comprehensive proteome map of the lipid-requiring nosocomial pathogen Corynebacterium jeikeium K411.

scientific article published on April 2007

A microbiological and clinical review on Corynebacterium kroppenstedtii

scientific article

Binding of the IclR-type regulator HutR in the histidine utilization (hut) gene cluster of the human pathogen Corynebacterium resistens DSM 45100 ⬇️

scientific article published on April 30, 2012

Bioinformatics in Germany: toward a national-level infrastructure

scientific article published in March 2019

Characterization of the LacI-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032.

scientific article

Chinese hamster genome sequenced from sorted chromosomes

scientific article published in August 2013

Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy.

scientific article

Colonization of human epithelial cell lines by Corynebacterium ulcerans from human and animal sources.

scientific article

Comparative Pathway Analyzer--a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms

scientific article published on 6 June 2008

Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors.

scientific article

Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium

scientific article published in September 2004

Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen

scientific article published on 26 March 2015

Complete Genome Sequence of Corynebacterium camporealensis DSM 44610, Isolated from the Milk of a Manchega Sheep with Subclinical Mastitis

scientific article

Complete Genome Sequence of Corynebacterium falsenii DSM 44353 To Study the Evolution of Corynebacterium Cluster 3 Species

scientific article published on 6 March 2014

Complete Genome Sequence of Corynebacterium imitans DSM 44264, Isolated from a Five-Month-Old Boy with Suspected Pharyngeal Diphtheria

scientific article

Complete Genome Sequence of Corynebacterium kutscheri DSM 20755, a Corynebacterial Type Strain with Remarkably Low G+C Content of Chromosomal DNA

scientific article

Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis

scientific article published on 23 May 2013

Complete Genome Sequence of Corynebacterium ureicelerivorans DSM 45051, a Lipophilic and Urea-Splitting Isolate from the Blood Culture of a Septicemia Patient

scientific article published on 20 November 2014

Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus.

scientific article

Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis

scientific article published on 10 September 2015

Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise

scientific article published on 30 July 2015

Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora

scientific article

Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion

scientific article

Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis

scientific article

Complete genome sequence of Corynebacterium pseudotuberculosis strain CIP 52.97, isolated from a horse in Kenya

scientific article published on December 2011

Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation

scientific article

Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient

scientific article published on 23 April 2012

CoryneRegNet 3.0--an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli.

scientific article published on 20 December 2006

CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands.

scientific article

CoryneRegNet 7, the reference database and analysis platform for corynebacterial gene regulatory networks

scientific article published on 11 May 2020

CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks

scientific article

Corynebacterium diphtheriae 67-72p hemagglutinin, characterized as the protein DIP0733, contributes to invasion and induction of apoptosis in HEp-2 cells

scientific article published on 5 January 2012

Corynebacterium ulcerans, an emerging human pathogen.

scientific article published on 22 August 2016

Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source

scientific article

Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing

scientific article

Draft Genome Sequence of the Multidrug-Resistant Clinical Isolate Dermabacter hominis 1368.

scientific article published on 24 July 2014

Draft genome of Streptomyces tsukubaensis NRRL 18488, the producer of the clinically important immunosuppressant tacrolimus (FK506).

scientific article

Draft genome sequence of Corynebacterium bovis DSM 20582, which causes clinical mastitis in dairy cows

scientific article published on August 2012

Draft genome sequence of Turicella otitidis ATCC 51513, isolated from middle ear fluid from a child with otitis media

scientific article published on November 2012

Draft genome sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10.

scientific article published on December 2012

EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data

scientific article

Efficient electrotransformation of corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1.

scientific article

Ether-linked lipids of Dermabacter hominis, a human skin actinobacterium.

scientific article

Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains

scientific article

Expression of alr gene from Corynebacterium glutamicum ATCC 13032 in Escherichia coli and molecular characterization of the recombinant alanine racemase

scientific article published on 16 May 2006

GIPSy: Genomic island prediction software.

scientific article published on 12 September 2015

Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays

scientific article

Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production

scientific article published on 29 November 2012

Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities

scientific article published on 23 February 2012

Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse

scientific article

Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum

scientific article published in September 2003

Heat shock proteome analysis of wild-type Corynebacterium glutamicum ATCC 13032 and a spontaneous mutant lacking GroEL1, a dispensable chaperone

scientific article

High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly.

scientific article

High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum

scientific article published on 25 October 2012

Identification and characterization of the last two unknown genes, dapC and dapF, in the succinylase branch of the L-lysine biosynthesis of Corynebacterium glutamicum

scientific article published on September 2003

Identification of McbR as transcription regulator of aecD and genes involved in methionine and cysteine biosynthesis in Corynebacterium jeikeium K411 ⬇️

scientific article published on November 21, 2010

Individual- and Species-Specific Skin Microbiomes in Three Different Estrildid Finch Species Revealed by 16S Amplicon Sequencing

scientific article published on 27 December 2017

Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence

scientific article

Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet

scientific article published in January 2009

KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa ⬇️

scientific article published on June 6, 2012

Molecular armory or niche factors: virulence determinants of Corynebacterium species

scientific article

Mycolic Acid Biosynthesis Genes in the Genome Sequence of Corynebacterium atypicum DSM 44849.

scientific article published on 21 August 2014

Next-generation sequencing of the CHO cell transcriptome

scientific article

On the trail of EHEC/EAEC--unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria

scientific article

PIPS: pathogenicity island prediction software.

scientific article

Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia

scientific article published on 13 April 2012

Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics

scientific article

Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032 ⬇️

scientific article published on September 16, 2010

RAPYD--rapid annotation platform for yeast data.

scientific article

Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis pathway

scientific journal article

Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study

article

Rational design of a Corynebacterium glutamicum pantothenate production strain and its characterization by metabolic flux analysis and genome-wide transcriptional profiling

scientific article

Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms.

scientific article

Strategy to sequence the genome of Corynebacterium glutamicum ATCC 13032: use of a cosmid and a bacterial artificial chromosome library

scientific article

Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor

scientific article published on 20 June 2008

The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100.

scientific article published on September 2002

The Corynebacterium glutamicum gene pmt encoding a glycosyltransferase related to eukaryotic protein-O-mannosyltransferases is essential for glycosylation of the resuscitation promoting factor (Rpf2) and other secreted proteins

scientific article published on 01 June 2006

The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate:sugar phosphotransferase system (PTS) in Corynebacterium glutamicum

scientific article

The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum

scientific article

The GlxR regulon of the amino acid producer Corynebacterium glutamicum: Detection of the corynebacterial core regulon and integration into the transcriptional regulatory network model.

scientific article

The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator

scientific article published on 3 June 2008

The IclR-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum

scientific article published on 26 January 2007

The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences

scientific article

The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032.

scientific article

The alanine racemase gene alr is an alternative to antibiotic resistance genes in cloning systems for industrial Corynebacterium glutamicum strains

scientific article published in October 2002

The alternative sigma factor SigB of Corynebacterium glutamicum modulates global gene expression during transition from exponential growth to stationary phase

scientific article published on 4 January 2007

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins

scientific article

The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence ⬇️

scientific article

The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere

scientific article

The crystal structures of apo and cAMP-bound GlxR from Corynebacterium glutamicum reveal structural and dynamic changes upon cAMP binding in CRP/FNR family transcription factors

scientific journal article

The extracytoplasmic function-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of disulfide stress-related genes

scientific article published on 4 May 2007

The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis

scientific article

The glycosylated cell surface protein Rpf2, containing a resuscitation-promoting factor motif, is involved in intercellular communication of Corynebacterium glutamicum

scientific article published on 3 August 2004

The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences

scientific article

The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing

scientific article

The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology

scientific article published on 27 May 2008

The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains

scientific article

The surface (S)-layer gene cspB of Corynebacterium glutamicum is transcriptionally activated by a LuxR-type regulator and located on a 6 kb genomic island absent from the type strain ATCC 13032.

scientific article published in April 2006

The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate

scientific article

The transcriptional regulatory network of Corynebacterium jeikeium K411 and its interaction with metabolic routes contributing to human body odor formation ⬇️

scientific article published on 09 February 2012

The transcriptional regulatory network of the amino acid producer Corynebacterium glutamicum

scientific article published on 20 December 2006

The transcriptional regulatory repertoire of Corynebacterium glutamicum: reconstruction of the network controlling pathways involved in lysine and glutamate production

scientific article published on 04 December 2009

Tips and tricks for the assembly of a Corynebacterium pseudotuberculosis genome using a semiconductor sequencer

scientific article published on 02 December 2012

Tools for genetic engineering in the amino acid-producing bacterium Corynebacterium glutamicum

scientific article

Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks.

scientific article published on 12 December 2008

Transcriptional control of lipid metabolism by the MarR‐like regulator FamR and the global regulator GlxR in the lipophilic axilla isolate Corynebacterium jeikeium K411 ⬇️

scientific article published on November 20, 2012

Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.).

scientific article published on 5 March 2014

Transcriptome sequencing of the human pathogen Corynebacterium diphtheriae NCTC 13129 provides detailed insights into its transcriptional landscape and into DtxR-mediated transcriptional regulation

scientific article

Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR

scientific journal article

Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids

scientific article

Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression

scientific article published on 30 June 2006

Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing

scientific article

Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare.

scientific article published on 30 July 2015

Virus-host coevolution: common patterns of nucleotide motif usage in Flaviviridae and their hosts

scientific article

Whole genome sequencing of environmental Vibrio cholerae O1 from 10 nanograms of DNA using short reads.

scientific article

Whole-Genome Sequence of the Clinical Strain Corynebacterium argentoratense DSM 44202, Isolated from a Human Throat Specimen

scientific article published on 3 October 2013

Whole-genome sequence of Corynebacterium pseudotuberculosis PAT10 strain isolated from sheep in Patagonia, Argentina

scientific article published on November 2011

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