List of works - Thomas C Rindflesch

A Knowledge Intensive Approach to Mapping Clinical Narrative to LOINC ⬇️

scientific article published on November 13, 2010

A closed literature-based discovery technique finds a mechanistic link between hypogonadism and diminished sleep quality in aging men.

scientific article

A graph-based recovery and decomposition of Swanson’s hypothesis using semantic predications ⬇️

scientific article published on September 28, 2012

A literature-based assessment of concept pairs as a measure of semantic relatedness

scientific article

A methodology for extending domain coverage in SemRep

scientific article

Adapting Semantic Natural Language Processing Technology to Address Information Overload in Influenza Epidemic Management

scientific article

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease

scientific article

Assessing the consistency of a biomedical terminology through lexical knowledge

scientific article

Assigning factuality values to semantic relations extracted from biomedical research literature.

scientific article

Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference

scientific article

Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation

scientific article

Biomedical question answering using semantic relations

scientific article

Biomedical text summarization to support genetic database curation: using Semantic MEDLINE to create a secondary database of genetic information ⬇️

scientific article (publication date: October 2010)

Clustering cliques for graph-based summarization of the biomedical research literature

scientific article (publication date: 7 June 2013)

Combining relevance assignment with quality of the evidence to support guideline development ⬇️

scientific article published on January 1, 2010

Constructing a Graph Database for Semantic Literature-Based Discovery. ⬇️

scientific article published on January 2015

Constructing a semantic predication gold standard from the biomedical literature

scientific article

Context-driven automatic subgraph creation for literature-based discovery

scientific article published on 7 February 2015

Degree centrality for semantic abstraction summarization of therapeutic studies ⬇️

scientific article published on May 8, 2011

Determining prominent subdomains in medicine

scientific article

Differentiating Sense through Semantic Interaction Data

scientific article

Discovering discovery patterns with Predication-based Semantic Indexing.

scientific article published on 26 July 2012

Discovering protein similarity using natural language processing

scientific article

Effects of information and machine learning algorithms on word sense disambiguation with small datasets

scientific article published on August 2005

EpiphaNet: An Interactive Tool to Support Biomedical Discoveries.

scientific article published on 21 September 2010

Exploiting Literature-derived Knowledge and Semantics to Identify Potential Prostate Cancer Drugs

scientific article

Exploiting semantic relations for literature-based discovery ⬇️

scientific article published on January 2006

Exploring text mining from MEDLINE.

scientific article

Extending SemRep to the Public Health Domain

scientific article

Extracting molecular binding relationships from biomedical text

article

Extracting semantic predications from Medline citations for pharmacogenomics

scientific article

Finding UMLS Metathesaurus concepts in MEDLINE.

scientific article

Graph-based methods for discovery browsing with semantic predications.

scientific article published on 22 October 2011

Identifying plausible adverse drug reactions using knowledge extracted from the literature

scientific article

Identifying respiratory findings in emergency department reports for biosurveillance using MetaMap

scientific article published in January 2004

Identifying risk factors for metabolic syndrome in biomedical text.

scientific article

Informatics Support for Basic Research in Biomedicine

scientific article

Integrating a hypernymic proposition interpreter into a semantic processor for biomedical texts.

scientific article published in January 2003

Integration of data from omic studies with the literature-based discovery towards identification of novel treatments for neovascularization in diabetic retinopathy

scientific article

Interpreting hypernymic propositions in an online medical encyclopedia

scientific article

Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing

scientific article published on 27 December 2018

Knowledge-based methods to help clinicians find answers in MEDLINE.

scientific article

Large-scale structure of a network of co-occurring MeSH terms: statistical analysis of macroscopic properties

scientific article

Leveraging semantic knowledge in IRB databases to improve translation science.

scientific article

Link Prediction on a Network of Co-occurring MeSH Terms: Towards Literature-based Discovery

scientific article published on 20 July 2016

Link prediction in a MeSH co-occurrence network: preliminary results

scientific article

Medical facts to support inferencing in natural language processing

scientific article

Mining Biomedical Literature to Explore Interactions between Cancer Drugs and Dietary Supplements

scientific article published on 23 March 2015

NLP-based information extraction for managing the molecular biology literature.

scientific article

Natural language processing: state of the art and prospects for significant progress, a workshop sponsored by the National Library of Medicine

scientific article

Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury

scientific article published on 18 May 2015

Predication-based semantic indexing: permutations as a means to encode predications in semantic space.

scientific article

SemMedDB: a PubMed-scale repository of biomedical semantic predications

scientific article

Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox ⬇️

scientific article

Semantic characteristics of MEDLINE citations useful in therapeutic decision-making.

scientific article

Semantic processing to enhance retrieval of diagnosis citations from Medline

scientific article

Semantic processing to identify adverse drug event information from black box warnings

scientific article

Semantic processing to identify adverse drug event information from black box warnings.

scientific article published on 14 November 2014

Semantic processing to support clinical guideline development.

scientific article

Semantic relations asserting the etiology of genetic diseases

scientific article

Semantic relations for interpreting DNA microarray data

scientific article

Semantic representation of consumer questions and physician answers

scientific article published on 24 August 2005

Sortal anaphora resolution to enhance relation extraction from biomedical literature

scientific article

Spark, an application based on Serendipitous Knowledge Discovery

scientific article published on 27 December 2015

Summarization of an online medical encyclopedia

scientific article published in January 2004

Summarizing drug information in Medline citations.

scientific article published on January 2006

Synonym, topic model and predicate-based query expansion for retrieving clinical documents.

scientific article published on 3 November 2012

The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text

scientific article

Toward (semi-)automatic generation of bio-medical ontologies

scientific article

Toward automatic recognition of high quality clinical evidence

scientific article

Towards automatic extraction of research findings from the literature.

scientific article published on 11 October 2007

Towards automatic recognition of scientifically rigorous clinical research evidence.

scientific article published on 24 October 2008

Using Literature-Based Discovery to Explain Adverse Drug Effects

scientific article

Using SemRep to label semantic relations extracted from clinical text.

scientific article published on 3 November 2012

Using literature-based discovery to identify novel therapeutic approaches

scientific article published on March 2013

Using semantic predications to characterize the clinical cardiovascular literature

scientific article

Using semantic predications to uncover drug-drug interactions in clinical data

scientific article

Using symbolic knowledge in the UMLS to disambiguate words in small datasets with a naïve Bayes classifier.

scientific article published on January 2004

Using the literature-based discovery paradigm to investigate drug mechanisms

scientific article

Word Sense Disambiguation by Selecting the Best Semantic Type Based on Journal Descriptor Indexing: Preliminary Experiment

scientific article

List of works by Thomas C Rindflesch

A Knowledge Intensive Approach to Mapping Clinical Narrative to LOINC ⬇️

A closed literature-based discovery technique finds a mechanistic link between hypogonadism and diminished sleep quality in aging men.

A graph-based recovery and decomposition of Swanson’s hypothesis using semantic predications ⬇️

A literature-based assessment of concept pairs as a measure of semantic relatedness

A methodology for extending domain coverage in SemRep

Adapting Semantic Natural Language Processing Technology to Address Information Overload in Influenza Epidemic Management

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease

Assessing the consistency of a biomedical terminology through lexical knowledge

Assigning factuality values to semantic relations extracted from biomedical research literature.

Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference

Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation

Biomedical question answering using semantic relations

Biomedical text summarization to support genetic database curation: using Semantic MEDLINE to create a secondary database of genetic information ⬇️

Clustering cliques for graph-based summarization of the biomedical research literature

Combining relevance assignment with quality of the evidence to support guideline development ⬇️

Constructing a Graph Database for Semantic Literature-Based Discovery. ⬇️

Constructing a semantic predication gold standard from the biomedical literature

Context-driven automatic subgraph creation for literature-based discovery

Degree centrality for semantic abstraction summarization of therapeutic studies ⬇️

Determining prominent subdomains in medicine

Differentiating Sense through Semantic Interaction Data

Discovering discovery patterns with Predication-based Semantic Indexing.

Discovering protein similarity using natural language processing

Effects of information and machine learning algorithms on word sense disambiguation with small datasets

EpiphaNet: An Interactive Tool to Support Biomedical Discoveries.

Exploiting Literature-derived Knowledge and Semantics to Identify Potential Prostate Cancer Drugs

Exploiting semantic relations for literature-based discovery ⬇️

Exploring text mining from MEDLINE.

Extending SemRep to the Public Health Domain

Extracting molecular binding relationships from biomedical text

Extracting semantic predications from Medline citations for pharmacogenomics

Finding UMLS Metathesaurus concepts in MEDLINE.

Graph-based methods for discovery browsing with semantic predications.

Identifying plausible adverse drug reactions using knowledge extracted from the literature

Identifying respiratory findings in emergency department reports for biosurveillance using MetaMap

Identifying risk factors for metabolic syndrome in biomedical text.

Informatics Support for Basic Research in Biomedicine

Integrating a hypernymic proposition interpreter into a semantic processor for biomedical texts.

Integration of data from omic studies with the literature-based discovery towards identification of novel treatments for neovascularization in diabetic retinopathy

Interpreting hypernymic propositions in an online medical encyclopedia

Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing

Knowledge-based methods to help clinicians find answers in MEDLINE.

Large-scale structure of a network of co-occurring MeSH terms: statistical analysis of macroscopic properties

Leveraging semantic knowledge in IRB databases to improve translation science.

Link Prediction on a Network of Co-occurring MeSH Terms: Towards Literature-based Discovery

Link prediction in a MeSH co-occurrence network: preliminary results

Medical facts to support inferencing in natural language processing

Mining Biomedical Literature to Explore Interactions between Cancer Drugs and Dietary Supplements

NLP-based information extraction for managing the molecular biology literature.

Natural language processing: state of the art and prospects for significant progress, a workshop sponsored by the National Library of Medicine

Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury

Predication-based semantic indexing: permutations as a means to encode predications in semantic space.

SemMedDB: a PubMed-scale repository of biomedical semantic predications

Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox ⬇️

Semantic characteristics of MEDLINE citations useful in therapeutic decision-making.

Semantic processing to enhance retrieval of diagnosis citations from Medline

Semantic processing to identify adverse drug event information from black box warnings

Semantic processing to identify adverse drug event information from black box warnings.

Semantic processing to support clinical guideline development.

Semantic relations asserting the etiology of genetic diseases

Semantic relations for interpreting DNA microarray data

Semantic representation of consumer questions and physician answers

Sortal anaphora resolution to enhance relation extraction from biomedical literature

Spark, an application based on Serendipitous Knowledge Discovery

Summarization of an online medical encyclopedia

Summarizing drug information in Medline citations.

Synonym, topic model and predicate-based query expansion for retrieving clinical documents.

The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text

Toward (semi-)automatic generation of bio-medical ontologies

Toward automatic recognition of high quality clinical evidence

Towards automatic extraction of research findings from the literature.

Towards automatic recognition of scientifically rigorous clinical research evidence.

Using Literature-Based Discovery to Explain Adverse Drug Effects

Using SemRep to label semantic relations extracted from clinical text.

Using literature-based discovery to identify novel therapeutic approaches

Using semantic predications to characterize the clinical cardiovascular literature

Using semantic predications to uncover drug-drug interactions in clinical data

Using symbolic knowledge in the UMLS to disambiguate words in small datasets with a naïve Bayes classifier.

Using the literature-based discovery paradigm to investigate drug mechanisms