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List of works by Masayuki Machida

A comparative genomics study of 23 Aspergillus species from section Flavi

scientific article published on 27 February 2020

A polymerase chain reaction-based method for cloning novel members of a gene family using a combination of degenerate and inhibitory primers

scientific article published in May 2002

Affinity selection of DNA-binding proteins from yeast genomic DNA libraries by improved lambda phage display vector.

scientific article

Analysis of expressed sequence tags from the fungus Aspergillus oryzae cultured under different conditions

scientific article

Aspergillus flavus genomics as a tool for studying the mechanism of aflatoxin formation

scientific article published on 01 September 2008

Aspergillus luchuensis, an industrially important black Aspergillus in East Asia

scientific article

Biosynthesis of Novel Statins by Combining Heterologous Genes from Xylaria and Aspergillus

article

Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus

scientific article published on 16 May 2014

Class of cyclic ribosomal peptide synthetic genes in filamentous fungi

scientific article published on 15 December 2015

Comparative Genome Analysis Between Aspergillus oryzae Strains Reveals Close Relationship Between Sites of Mutation Localization and Regions of Highly Divergent Genes among Aspergillus Species ⬇️

scientific article published on August 21, 2012

Deletion analysis of the catalase-encoding gene (catB) promoter from Aspergillus oryzae

article

Deletion analysis of the superoxide dismutase (sodM) promoter from Aspergillus oryzae

scientific article published on 18 March 2006

Development of an automated SNP analysis method using a paramagnetic beads handling robot

scientific article

Erratum: Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

scientific article published in Nature

Expression of ustR and the Golgi protease KexB are required for ustiloxin B biosynthesis in Aspergillus oryzae.

scientific article published on 3 February 2016

Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.

scientific article

Further enhancement of FR901469 productivity by co-overexpression of cpcA, a cross-pathway control gene, and frbF in fungal sp. No. 11243.

scientific article published on 21 March 2017

Generation of large chromosomal deletions in koji molds Aspergillus oryzae and Aspergillus sojae via a loop-out recombination

scientific article published on 24 October 2008

Genome Sequence of Fungal Species No.11243, Which Produces the Antifungal Antibiotic FR901469

scientific article

Genome Sequence of Ustilaginoidea virens IPU010, a Rice Pathogenic Fungus Causing False Smut

scientific article published on 5 May 2016

Genome Sequence of the Fungal Strain 14919 Producing 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase Inhibitor FR901512

scientific article published on 06 April 2017

Genome Sequence of the Mucoromycotina Fungus Umbelopsis isabellina, an Effective Producer of Lipids.

scientific article published on 27 February 2014

Genome sequence of Aspergillus luchuensis NBRC 4314.

scientific article published on 20 September 2016

Genome sequencing and analysis of Aspergillus oryzae

scientific article

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus

scientific article

Genomics of Aspergillus oryzae.

scientific article published on 7 March 2007

Genomics of Aspergillus oryzae: learning from the history of Koji mold and exploration of its future

scientific article

Genomics of industrial Aspergilli and comparison with toxigenic relatives

scientific article published in September 2008

Heterologous Production of a Novel Cyclic Peptide Compound, KK-1, in Aspergillus oryzae ⬇️

scientific article published on 9 April 2018

Heterologous production of free dihomo-γ-linolenic acid by Aspergillus oryzae and its extracellular release via surfactant supplementation

article

High-efficiency extracellular release of free fatty acids from Aspergillus oryzae using non-ionic surfactants

scientific article published on 11 March 2017

Hybrid De Novo Genome Assembly Using MiSeq and SOLiD Short Read Data

scientific article published on 28 April 2015

Identification and characterization of genes responsible for biosynthesis of kojic acid, an industrially important compound from Aspergillus oryzae.

scientific article published on 16 September 2010

Identification of a basic helix-loop-helix-type transcription regulator gene in Aspergillus oryzae by systematically deleting large chromosomal segments

scientific article published on 24 July 2009

Identification of a putative FR901469 biosynthesis gene cluster in fungal sp. No. 11243 and enhancement of the productivity by overexpressing the transcription factor gene frbF.

scientific article published on 19 September 2016

Identification of regulatory elements in the glucoamylase-encoding gene (glaB) promoter from Aspergillus oryzae

scientific article published on 9 December 2012

Impact of Aspergillus oryzae genomics on industrial production of metabolites

scientific article

Improvement of the Aspergillus oryzae enolase promoter (P-enoA) by the introduction of cis-element repeats

scientific article published on 01 January 2005

Improvement of the lectin-antibody enzyme immunoassay of the alphafetoprotein carbohydrate chain for automation with the enzyme immunoassay robot

scientific article published on 01 August 2005

Increased production of fatty acids and triglycerides in Aspergillus oryzae by enhancing expressions of fatty acid synthesis-related genes.

scientific article published on 26 June 2012

Increased production of free fatty acids in Aspergillus oryzae by disruption of a predicted acyl-CoA synthetase gene.

scientific article published on 8 January 2015

Knockout of the SREBP system increases production of the polyketide FR901512 in filamentous fungal sp. No. 14919 and lovastatin in Aspergillus terreus ATCC20542.

scientific article published on 21 December 2017

Kojic acid biosynthesis in Aspergillus oryzae is regulated by a Zn(II)2Cys6 transcriptional activator and induced by kojic acid at the transcriptional level ⬇️

scientific article published on April 21, 2011

MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data

scientific article

Motif-independent de novo detection of secondary metabolite gene clusters-toward identification from filamentous fungi

scientific article

Motif-independent prediction of a secondary metabolism gene cluster using comparative genomics: application to sequenced genomes of Aspergillus and ten other filamentous fungal species

scientific article

Penicillin biosynthesis in Aspergillus oryzae and its overproduction by genetic engineering

scientific article published on 04 February 2010

Plasmid-encoded asp operon confers a proton motive metabolic cycle catalyzed by an aspartate-alanine exchange reaction

scientific article

Progress of Aspergillus oryzae genomics.

scientific article

Purification and characterization of a biodegradable plastic-degrading enzyme from Aspergillus oryzae

scientific article published on 27 January 2005

Search for transcription factors affecting productivity of the polyketide FR901512 in filamentous fungal sp. No. 14919 and identification of Drf1, a novel negative regulator of the biosynthetic gene cluster

scientific article published on 01 March 2019

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

scientific article

The beta-1,3-exoglucanase gene exgA (exg1) of Aspergillus oryzae is required to catabolize extracellular glucan, and is induced in growth on a solid surface.

scientific article published on 7 April 2007

Transcriptional analysis of genes for energy catabolism and hydrolytic enzymes in the filamentous fungus Aspergillus oryzae using cDNA microarrays and expressed sequence tags

scientific article published on 20 May 2004

Transcriptional regulation of genes on the non-syntenic blocks of Aspergillus oryzae and its functional relationship to solid-state cultivation

scientific article published on 25 September 2007

Unveiling the Biosynthetic Pathway of the Ribosomally Synthesized and Post-translationally Modified Peptide Ustiloxin B in Filamentous Fungi

scientific article published on 11 May 2016

Use of the Aspergillus oryzae actin gene promoter in a novel reporter system for exploring antifungal compounds and their target genes

scientific article published on 13 May 2010

Use of the kojA promoter, involved in kojic acid biosynthesis, for polyketide production in Aspergillus oryzae: implications for long-term production ⬇️

scientific article published on 26 October 2019

Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens.

scientific article published on 19 November 2014

Whole genome comparison of Aspergillus flavus and A. oryzae

scientific article published on 01 September 2006

[Genome sequencing of Aspergillus oryzae]

scientific article published on 01 May 2006

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