List of works by Socorro Gama-Castro

A comparative genome analysis of the RpoS sigmulon shows a high diversity of responses and origins.

scientific article

A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0

scientific article published on 16 August 2018

Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12.

scientific article

Bioinformatics resources for the study of gene regulation in bacteria

scientific article published on 31 October 2008

COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia

scientific article

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses

scientific article published on 19 November 2015

EcoCyc: a comprehensive database of Escherichia coli biology

scientific article

EcoCyc: a comprehensive database resource for Escherichia coli

scientific article

EcoCyc: a comprehensive view of Escherichia coli biology

scientific article published on 30 October 2008

EcoCyc: fusing model organism databases with systems biology

scientific article

Environmental conditions and transcriptional regulation in Escherichia coli: a physiological integrative approach.

scientific article published on December 2003

First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes

scientific article published in January 2017

Knowledge extraction for assisted curation of summaries of bacterial transcription factor properties

scientific article published on 01 December 2020

Multidimensional annotation of the Escherichia coli K-12 genome

scientific article

Overview of the interactive task in BioCreative V

scientific article (publication date: 2016)

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

scientific article published on January 2004

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

scientific article

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

scientific article

RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12

scientific article published in 2022

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12

article

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.

scientific article

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

scientific article

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.

scientific article

Similarity corpus on microbial transcriptional regulation

scientific article published on 22 May 2019

Strategies towards digital and semi-automated curation in RegulonDB

Strategies towards digital and semi-automated curation in RegulonDB.

scientific article

The EcoCyc Database

scientific article

The EcoCyc Database

scientific article published on 01 November 2018

The EcoCyc Database.

scientific article

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.

scientific article

The comprehensive updated regulatory network of Escherichia coli K-12.

scientific article

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