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List of works by Johannes A van Veen

Acidobacterial community responses to agricultural management of soybean in Amazon forest soils.

scientific article published on 19 October 2012

Antifungal Rhizosphere Bacteria Can increase as Response to the Presence of Saprotrophic Fungi

scientific article published on 22 September 2015

Bacterial Community Succession in Pine-Wood Decomposition

scientific article published on March 2016

Biosynthetic genes and activity spectrum of antifungal polyynes from Collimonas fungivorans Ter331.

scientific article

Characterisation of Lysobacter enzymogenes (Christensen and Cook 1978) strain 3.1T8, a powerful antagonist of fungal diseases of cucumber

scientific article published in January 2003

Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications

scientific article published on 24 January 2017

Co-Variation of Bacterial and Fungal Communities in Different Sorghum Cultivars and Growth Stages is Soil Dependent

scientific article

Collimonas fungivorans gen. nov., sp. nov., a chitinolytic soil bacterium with the ability to grow on living fungal hyphae

scientific article

Community analysis of arbuscular mycorrhizal fungi associated with Ammophila arenaria in Dutch coastal sand dunes

scientific article published on 01 March 2002

Comparative analysis of acidobacterial genomic fragments from terrestrial and aquatic metagenomic libraries, with emphasis on acidobacteria subdivision 6.

scientific article

Comparative genomics of the pIPO2/pSB102 family of environmental plasmids: sequence, evolution, and ecology of pTer331 isolated from Collimonas fungivorans Ter331.

scientific article

Defensive properties of pyrrolizidine alkaloids against microorganisms ⬇️

scientific article published on November 23, 2010

Differences in vegetation composition and plant species identity lead to only minor changes in soil-borne microbial communities in a former arable field

scientific article

Dominance of bacterial ammonium oxidizers and fungal denitrifiers in the complex nitrogen cycle pathways related to nitrous oxide emission

Downward vascular translocation of a green fluorescent protein-tagged strain of Dickeya sp. (Biovar 3) from stem and leaf inoculation sites on potato.

scientific article published in November 2010

Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger

scientific article published on 26 May 2011

Effect of and strains on sorghum growth is plant genotype dependent

article

Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms

scientific article

Endoparasitic nematodes reduce multiplication of ectoparasitic nematodes, but do not prevent growth reduction of Ammophila arenaria (L.) Link (marram grass)

scientific article published in 2004

Evaluation of a simple, non-alkaline extraction protocol to quantify soil ergosterol

article by Annelies S. de Ridder-Duine et al published September 2006 in Pedobiologia

Exploring the genomic traits of fungus-feeding bacterial genus Collimonas

scientific article published on 24 December 2015

Finding the needles in the metagenome haystack

scientific article (publication date: April 2007)

Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere

scientific article published on 2 August 2016

Fungal biomass development in a chronosequence of land abandonment

article

Genomic comparison of chitinolytic enzyme systems from terrestrial and aquatic bacteria

scientific article published on 20 June 2014

Genomic flank-sequencing of plasposon insertion sites for rapid identification of functional genes

scientific article published on 2 February 2006

High-Level Abundances of Methanobacteriales and Syntrophobacterales May Help To Prevent Corrosion of Metal Sheet Piles

scientific article published on 01 October 2019

Identification and characterization of genes underlying chitinolysis in Collimonas fungivorans Ter331.

scientific article published on 30 July 2008

Impact of Collimonas bacteria on community composition of soil fungi

scientific article

Impact of interspecific interactions on antimicrobial activity among soil bacteria

scientific article published on 28 October 2014

Impact of long-term N, P, K, and NPK fertilization on the composition and potential functions of the bacterial community in grassland soil

scientific article published on 21 August 2014

Impacts of 3 years of elevated atmospheric CO2 on rhizosphere carbon flow and microbial community dynamics.

scientific article published on 7 November 2012

In vitro suppression of fungi caused by combinations of apparently non-antagonistic soil bacteria

scientific article published in January 2007

Initial decay of woody fragments in soil is influenced by size, vertical position, nitrogen availability and soil origin

Methods for Baiting and Enriching Fungus-Feeding (Mycophagous) Rhizosphere Bacteria

scientific article published on 22 December 2015

Microbial community composition affects soil fungistasis

scientific article

Microbial secondary succession in a chronosequence of chalk grasslands

scientific article

Mycophagous growth of Collimonas bacteria in natural soils, impact on fungal biomass turnover and interactions with mycophagous Trichoderma fungi

scientific article published on 16 October 2008

Nitrification inhibitors effectively target N2 O-producing Nitrosospira spp. in tropical soil

scientific article published on 14 March 2019

Nitrosospira sp. Govern Nitrous Oxide Emissions in a Tropical Soil Amended With Residues of Bioenergy Crop.

scientific article

PCR-denaturing gradient gel electrophoresis profiling of inter- and intraspecies 18S rRNA gene sequence heterogeneity is an accurate and sensitive method to assess species diversity of arbuscular mycorrhizal fungi of the genus Gigaspora

scientific article published on March 2004

Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil.

scientific article

Phylogenetic diversity of Acidobacteria in a former agricultural soil

scientific article

Phylogeny-function analysis of (meta)genomic libraries: screening for expression of ribosomal RNA genes by large-insert library fluorescent in situ hybridization (LIL-FISH).

scientific article published in September 2004

Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland

scientific article

Possible Mechanism for Spontaneous Establishment ofCalluna vulgarisin a Recently Abandoned Agricultural Field

article by Annemieke van der Wal et al published March 2009 in Restoration Ecology

Primer Sets Developed for Functional Genes Reveal Shifts in Functionality of Fungal Community in Soils

scientific article published on 29 November 2016

Reduction of rare soil microbes modifies plant-herbivore interactions.

scientific article published on 11 January 2010

Revisiting the dilution procedure used to manipulate microbial biodiversity in terrestrial systems.

scientific article

Rhizobacterial community structure differences among sorghum cultivars in different growth stages and soils

scientific article published on August 2017

Rhizosphere bacterial community composition in natural stands of Carex arenaria (sand sedge) is determined by bulk soil community composition

article

Root damage and aboveground herbivory change concentration and composition of pyrrolizidine alkaloids of Senecio jacobaea

article

Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2

scientific article

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

scientific article

Soil and Freshwater and Marine Sediment Food Webs: Their Structure and Function

Soil characteristics more strongly influence soil bacterial communities than land-use type

scientific article

Soil microbial diversity patterns of a lowland spring environment.

scientific article

Soil microbiome responses to the short-term effects of Amazonian deforestation.

scientific article published on 21 April 2015

Soil networks become more connected and take up more carbon as nature restoration progresses.

scientific article

Soil-borne microbial functional structure across different land uses.

scientific article published on 10 August 2014

Soil-borne microbiome: linking diversity to function

scientific article published on 14 January 2015

Specific detection and real-time PCR quantification of potentially mycophagous bacteria belonging to the genus Collimonas in different soil ecosystems

scientific article published on 4 May 2007

Specific rhizosphere bacterial and fungal groups respond differently to elevated atmospheric CO(2).

scientific article

Successive DNA extractions improve characterization of soil microbial communities

scientific article published on February 2017

Taxonomical and functional microbial community selection in soybean rhizosphere

scientific article published on 20 February 2014

The Ecology of Acidobacteria: Moving beyond Genes and Genomes

scientific article

The analysis of pyrrolizidine alkaloids in Jacobaea vulgaris; a comparison of extraction and detection methods

scientific article published in March 2010

The dual role of microbes in corrosion

scientific article

The genotype dependent presence of pyrrolizidine alkaloids as tertiary amine in Jacobaea vulgaris

scientific article

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