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List of works by Subha Madhavan

A Computational Approach for Prioritizing Selection of Therapies Targeting Drug Resistant Variation in Anaplastic Lymphoma Kinase.

scientific article

A case study for cloud based high throughput analysis of NGS data using the globus genomics system

scientific article

A pilot study evaluating concordance between blood-based and patient-matched tumor molecular testing within pancreatic cancer patients participating in the Know Your Tumor (KYT) initiative

scientific article

AISAIC: a software suite for accurate identification of significant aberrations in cancers

scientific article

Acquired resistance to a MET antibody in vivo can be overcome by the MET antibody mixture Sym015.

scientific article published on 15 March 2018

Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards

scientific article published on 01 November 2018

An evidence-based network approach to recommending targeted cancer therapies

An informatics research agenda to support precision medicine: seven key areas

scientific article published on 23 April 2016

CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data

scientific article published on 13 December 2017

ClinGen Cancer Somatic Working Group - standardizing and democratizing access to cancer molecular diagnostic data to drive translational research

scientific article published in January 2018

Correction: Discovery of Metabolic Biomarkers for Duchenne Muscular Dystrophy within a Natural History Study

scientific article published on 19 July 2016

Correction: Recurrence of Early Stage Colon Cancer Predicted by Expression Pattern of Circulating microRNAs

scientific article (publication date: 16 January 2014)

Curation of the Pancreatic Ductal Adenocarcinoma Subset of the Cancer Genome Atlas Is Essential for Accurate Conclusions about Survival-Related Molecular Mechanisms

scientific article published on 08 May 2018

DDN: a caBIG® analytical tool for differential network analysis

scientific article

Differentially expressed miRNAs in triple negative breast cancer between African-American and non-Hispanic white women.

scientific article

Discovery of Metabolic Biomarkers for Duchenne Muscular Dystrophy within a Natural History Study

scientific article published on 15 April 2016

Distinct lymphocyte antigens 6 (Ly6) family members Ly6D, Ly6E, Ly6K and Ly6H drive tumorigenesis and clinical outcome

scientific article

EGR1 regulates cellular metabolism and survival in endocrine resistant breast cancer.

scientific article published on 30 May 2017

ERRγ target genes are poor prognostic factors in Tamoxifen-treated breast cancer

scientific article published on 15 May 2015

G-CODE: enabling systems medicine through innovative informatics.

scientific article published on 19 September 2011

G-DOC Plus - an integrative bioinformatics platform for precision medicine.

scientific article

G-DOC: a systems medicine platform for personalized oncology

scientific article

Genome-wide multi-omics profiling of colorectal cancer identifies immune determinants strongly associated with relapse

scientific article

Identification of a novel metabolic-related mutation (IDH1) in metastatic pancreatic cancer

scientific article published on 28 July 2016

In Silico Discovery of Mitosis Regulation Networks Associated with Early Distant Metastases in Estrogen Receptor Positive Breast Cancers ⬇️

scientific article published on February 13, 2013

In silico analysis of autoimmune diseases and genetic relationships to vaccination against infectious diseases

scientific article

Informatics and data quality at collaborative multicenter Breast and Colon Cancer Family Registries

scientific article

Ly6E/K Signaling to TGFβ Promotes Breast Cancer Progression, Immune Escape, and Drug Resistance

scientific article published on 11 April 2016

Molecular Profiling of Patients with Pancreatic Cancer: Initial Results from the Know Your Tumor Initiative

scientific article published on 28 June 2018

NCI Workshop Report: Clinical and Computational Requirements for Correlating Imaging Phenotypes with Genomics Signatures

scientific article

POPSTR: Inference of Admixed Population Structure Based on Single-Nucleotide Polymorphisms and Copy Number Variations

scientific article published on 2 January 2018

PUGSVM: a caBIG™ analytical tool for multiclass gene selection and predictive classification

scientific article

Pediatric palliative care and eHealth opportunities for patient-centered care

scientific article (publication date: May 2011)

Performance of PREMM(1,2,6), MMRpredict, and MMRpro in detecting Lynch syndrome among endometrial cancer cases

scientific article published on 8 March 2012

Pharmacogenomic characterization of gemcitabine response--a framework for data integration to enable personalized medicine

scientific article

Platform for Personalized Oncology: Integrative analyses reveal novel molecular signatures associated with colorectal cancer relapse

scientific article published on 18 March 2013

Preclinical magnetic resonance imaging and systems biology in cancer research: current applications and challenges.

scientific article

Predicting new indications for approved drugs using a proteochemometric method

scientific article

Quantification and expert evaluation of evidence for chemopredictive biomarkers to personalize cancer treatment.

scientific article

Recurrence of early stage colon cancer predicted by expression pattern of circulating microRNAs

scientific article published on 06 January 2014

Rembrandt: helping personalized medicine become a reality through integrative translational research

scientific article published on 10 February 2009

SNP2Structure: A Public and Versatile Resource for Mapping and Three-Dimensional Modeling of Missense SNPs on Human Protein Structures

scientific article

Somatic cancer variant curation and harmonization through consensus minimum variant level data

scientific article

Standardizing And Democratizing Access To Cancer Molecular Diagnostic Test Data From Patients To Drive Translational Research.

scientific article

Super enhancer inhibitors suppress MYC driven transcriptional amplification and tumor progression in osteosarcoma.

scientific article published on 4 April 2018

The CPTAC Data Portal: A Resource for Cancer Proteomics Research

scientific article

The REMBRANDT study, a large collection of genomic data from brain cancer patients

scientific article published on 14 August 2018

eGARD: Extracting associations between genomic anomalies and drug responses from text.

scientific article published on 20 December 2017

iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature

scientific article published on 01 January 2018

viGEN: An Open Source Pipeline for the Detection and Quantification of Viral RNA in Human Tumors.

scientific article

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