List of works - Ziv Shkedy

A Closer Look on Spatiotemporal Variations of Dissolved Oxygen in Waste Stabilization Ponds Using Mixed Models

A Comparison of Procedures for Controlling the False Discovery Rate in the Presence of Small Variance Genes: A Simulation Study

article

A cross-validation study to select a classification procedure for clinical diagnosis based on proteomic mass spectrometry.

scientific article published on 24 March 2008

A hierarchical Binomial-Poisson model for the analysis of a crossover design for correlated binary data when the number of trials is dose-dependent

scientific article

A joint modeling approach for uncovering associations between gene expression, bioactivity and chemical structure in early drug discovery to guide lead selection and genomic biomarker development

scientific article

A mathematical model for HIV and hepatitis C co-infection and its assessment from a statistical perspective

scientific article published on 17 January 2013

A multivariate linear model for investigating the association between gene-module co-expression and a continuous covariate

scientific article published on 15 March 2019

A random effects model for the identification of differential splicing (REIDS) using exon and HTA arrays

scientific article

Alternative methods to evaluate trial level surrogacy

scientific article published in January 2008

Analysis of cross-over designs with serial correlation within periods using semi-parametric mixed models

scientific article published on 01 December 2008

Application of semiparametric mixed models and simultaneous confidence bands in a cardiovascular safety experiment with longitudinal data

scientific article

Behavioral testing of antidepressant compounds: an analysis of crossover design for correlated binary data

scientific article published in June 2005

Choice of initial antiretroviral drugs and treatment outcomes among HIV-infected patients in sub-Saharan Africa: systematic review and meta-analysis of observational studies

scientific article

Choice of units of analysis and modeling strategies in multilevel hierarchical models

Comparison of methods for the selection of genomic biomarkers

scientific article

Connecting gene expression data from connectivity map and in silico target predictions for small molecule mechanism-of-action analysis.

scientific article

Diffusion kurtosis imaging allows the early detection and longitudinal follow-up of amyloid-β-induced pathology.

scientific article

Estimating herd-specific force of infection by using random-effects models for clustered binary data and monotone fractional polynomials

article

Estimating infectious disease parameters from data on social contacts and serological status

article

Estimation of the Force of Infection from Current Status Data Using Generalized Linear Mixed Models

article published in 2007

FABIA: factor analysis for bicluster acquisition

scientific article

Filtering data from high-throughput experiments based on measurement reliability.

scientific article published on 8 November 2010

Gene filtering in the analysis of Illumina microarray experiments.

scientific article published on 6 January 2012

Genomic Biomarkers for a Binary Clinical Outcome in Early Drug Development Microarray Experiments

scientific article published on 01 January 2012

Handling missingness when modeling the force of infection from clustered seroprevalence data

article by Niel Hens et al published December 2007 in Journal of Agricultural, Biological, and Environmental Statistics

High dimensional surrogacy: computational aspects of an upscaled analysis

scientific article published on 28 August 2019

Identification of in vitro and in vivo disconnects using transcriptomic data

scientific article

Identification of the minimum effective dose for normally distributed data using a Bayesian variable selection approach.

scientific article

Informative or noninformative calls for gene expression: a latent variable approach.

scientific article published on 6 January 2010

Mining social mixing patterns for infectious disease models based on a two-day population survey in Belgium

scientific article

Model-based estimates of long-term persistence of induced HPV antibodies: a flexible subject-specific approach

scientific article published on January 2013

Model-based prediction of CD4 cells counts in HIV-infected adults on antiretroviral therapy in Northwest Ethiopia: A flexible mixed effects approach

scientific article published on 10 July 2019

Modeling Outcomes of First-Line Antiretroviral Therapy and Rate of CD4 Counts Change among a Cohort of HIV/AIDS Patients in Ethiopia: A Retrospective Cohort Study

scientific article

Modeling anti-KLH ELISA data using two-stage and mixed effects models in support of immunotoxicological studies

scientific article

Modelling forces of infection by using monotone local polynomials

Multi-state models for the analysis of time-to-treatment modification among HIV patients under highly active antiretroviral therapy in Southwest Ethiopia ⬇️

scientific article

Prentice's Approach and the Meta-Analytic Paradigm: A Reflection on the Role of Statistics in the Evaluation of Surrogate Endpoints

article

Quality control of Platinum Spike dataset by probe-level mixed models

scientific article published in December 2013

Revealing age-specific past and future unrelated costs of pneumococcal infections by flexible generalized estimating equations

article

Simultaneous mapping of multiple gene loci with pooled segregants

scientific article published on 18 February 2013

Testing for trends in dose-response microarray experiments: a comparison of several testing procedures, multiplicity and resampling-based inference

scientific article

Testing the Effectiveness of Community-Based Dengue Vector Control Interventions Using Semiparametric Mixed Models ⬇️

scientific article published on January 12, 2012

The Detection of Metabolite-Mediated Gene Module Co-Expression Using Multivariate Linear Models

scientific article

The Usage of Exon-Exon Splice Junctions for the Detection of Alternative Splicing using the REIDS model.

scientific article

The relationship between economic status, knowledge on dengue, risk perceptions and practices

scientific article

The seroepidemiology of primary varicella-zoster virus infection in Flanders (Belgium).

scientific article published on 24 September 2002

The use of semiparametric mixed models to analyze PamChip(R) peptide array data: an application to an oncology experiment.

scientific article

Translation of disease associated gene signatures across tissues

scientific article published on January 2015

Using Linear Mixed Models for Normalization of cDNA Microarrays

scientific article published on 26 July 2007

Using transcriptomics to guide lead optimization in drug discovery projects: Lessons learned from the QSTAR project.

scientific article

Weighted similarity-based clustering of chemical structures and bioactivity data in early drug discovery

scientific article

List of works by Ziv Shkedy

A Closer Look on Spatiotemporal Variations of Dissolved Oxygen in Waste Stabilization Ponds Using Mixed Models

A Comparison of Procedures for Controlling the False Discovery Rate in the Presence of Small Variance Genes: A Simulation Study

A cross-validation study to select a classification procedure for clinical diagnosis based on proteomic mass spectrometry.

A hierarchical Binomial-Poisson model for the analysis of a crossover design for correlated binary data when the number of trials is dose-dependent

A joint modeling approach for uncovering associations between gene expression, bioactivity and chemical structure in early drug discovery to guide lead selection and genomic biomarker development

A mathematical model for HIV and hepatitis C co-infection and its assessment from a statistical perspective

A multivariate linear model for investigating the association between gene-module co-expression and a continuous covariate

A random effects model for the identification of differential splicing (REIDS) using exon and HTA arrays

Alternative methods to evaluate trial level surrogacy

Analysis of cross-over designs with serial correlation within periods using semi-parametric mixed models

Application of semiparametric mixed models and simultaneous confidence bands in a cardiovascular safety experiment with longitudinal data

Behavioral testing of antidepressant compounds: an analysis of crossover design for correlated binary data

Choice of initial antiretroviral drugs and treatment outcomes among HIV-infected patients in sub-Saharan Africa: systematic review and meta-analysis of observational studies

Choice of units of analysis and modeling strategies in multilevel hierarchical models

Comparison of methods for the selection of genomic biomarkers

Connecting gene expression data from connectivity map and in silico target predictions for small molecule mechanism-of-action analysis.

Diffusion kurtosis imaging allows the early detection and longitudinal follow-up of amyloid-β-induced pathology.

Estimating herd-specific force of infection by using random-effects models for clustered binary data and monotone fractional polynomials

Estimating infectious disease parameters from data on social contacts and serological status

Estimation of the Force of Infection from Current Status Data Using Generalized Linear Mixed Models

FABIA: factor analysis for bicluster acquisition

Filtering data from high-throughput experiments based on measurement reliability.

Gene filtering in the analysis of Illumina microarray experiments.

Genomic Biomarkers for a Binary Clinical Outcome in Early Drug Development Microarray Experiments

Handling missingness when modeling the force of infection from clustered seroprevalence data

High dimensional surrogacy: computational aspects of an upscaled analysis

Identification of in vitro and in vivo disconnects using transcriptomic data

Identification of the minimum effective dose for normally distributed data using a Bayesian variable selection approach.

Informative or noninformative calls for gene expression: a latent variable approach.

Mining social mixing patterns for infectious disease models based on a two-day population survey in Belgium

Model-based estimates of long-term persistence of induced HPV antibodies: a flexible subject-specific approach

Model-based prediction of CD4 cells counts in HIV-infected adults on antiretroviral therapy in Northwest Ethiopia: A flexible mixed effects approach

Modeling Outcomes of First-Line Antiretroviral Therapy and Rate of CD4 Counts Change among a Cohort of HIV/AIDS Patients in Ethiopia: A Retrospective Cohort Study

Modeling anti-KLH ELISA data using two-stage and mixed effects models in support of immunotoxicological studies

Modelling forces of infection by using monotone local polynomials

Multi-state models for the analysis of time-to-treatment modification among HIV patients under highly active antiretroviral therapy in Southwest Ethiopia ⬇️

Prentice's Approach and the Meta-Analytic Paradigm: A Reflection on the Role of Statistics in the Evaluation of Surrogate Endpoints

Quality control of Platinum Spike dataset by probe-level mixed models

Revealing age-specific past and future unrelated costs of pneumococcal infections by flexible generalized estimating equations

Simultaneous mapping of multiple gene loci with pooled segregants

Testing for trends in dose-response microarray experiments: a comparison of several testing procedures, multiplicity and resampling-based inference

Testing the Effectiveness of Community-Based Dengue Vector Control Interventions Using Semiparametric Mixed Models ⬇️

The Detection of Metabolite-Mediated Gene Module Co-Expression Using Multivariate Linear Models

The Usage of Exon-Exon Splice Junctions for the Detection of Alternative Splicing using the REIDS model.

The relationship between economic status, knowledge on dengue, risk perceptions and practices

The seroepidemiology of primary varicella-zoster virus infection in Flanders (Belgium).

The use of semiparametric mixed models to analyze PamChip(R) peptide array data: an application to an oncology experiment.

Translation of disease associated gene signatures across tissues

Using Linear Mixed Models for Normalization of cDNA Microarrays

Using transcriptomics to guide lead optimization in drug discovery projects: Lessons learned from the QSTAR project.

Weighted similarity-based clustering of chemical structures and bioactivity data in early drug discovery