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List of works by Michael Bada

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools

scientific article

A short study on the success of the Gene Ontology

2004 article

Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science ⬇️

scientific article

Concept annotation in the CRAFT corpus

scientific article

Concept recognition as a machine translation problem

scientific article published on 17 December 2021

Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles

scientific article

Cross-product extensions of the Gene Ontology

scientific article

Desiderata for ontologies to be used in semantic annotation of biomedical documents

scientific article

Enrichment of OBO ontologies

scientific article published on 26 July 2006

Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies.

scientific article published in January 2006

Gold-standard ontology-based anatomical annotation in the CRAFT Corpus

article

Identification of OBO nonalignments and its implications for OBO enrichment

scientific article published on 07 May 2008

KaBOB: ontology-based semantic integration of biomedical databases

scientific article

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

scientific article (publication date: 26 February 2014)

Mapping of biomedical text to concepts of lexicons, terminologies, and ontologies

scientific article published on January 2014

Mining biochemical information: lessons taught by the ribosome

scientific article

OWL-NETS: Transforming OWL Representations for Improved Network Inference.

scientific article published in January 2018

Representing annotation compositionality and provenance for the Semantic Web.

scientific article

Ribosomal dynamics inferred from variations in experimental measurements

scientific article

Semantic Relations in Compound Nouns: Perspectives from Inter-Annotator Agreement

scientific article published in January 2017

Using the Gene Ontology to Annotate Biomedical Journal Articles

Using the Gene Ontology to Annotate Biomedical Journal Articles

article

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