List of works - Raquel Cardoso de Melo Minardi

3-Keto-5-aminohexanoate Cleavage Enzyme: A COMMON FOLD FOR AN UNCOMMON CLAISEN-TYPE CONDENSATION

scientific article

A Computational Method to Propose Mutations in Enzymes Based on Structural Signature Variation (SSV)

scientific article published on 15 January 2019

Conformational flexibility correlates with glucose tolerance for point mutations in β-glucosidases - a computational study

scientific article published on 10 March 2020

Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns

scientific article

E-Volve: understanding the impact of mutations in SARS-CoV-2 variants spike protein on antibodies and ACE2 affinity through patterns of chemical interactions at protein interfaces

scientific article published on 22 March 2022

ENZYMAP: exploiting protein annotation for modeling and predicting EC number changes in UniProt/Swiss-Prot

scientific article

GASS: identifying enzyme active sites with genetic algorithms.

scientific article

GRaSP: a graph-based residue neighborhood strategy to predict binding sites

scientific article published on 01 December 2020

Glutantβase: a database for improving the rational design of glucose-tolerant β-glucosidases

scientific article published on 01 July 2020

Identification of subfamily-specific sites based on active sites modeling and clustering ⬇️

scientific article published on October 26, 2010

Introducing Programming Skills for Life Science Students

scientific article published on 12 March 2019

Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering

scientific article

Molecular Dynamics Gives New Insights into the Glucose Tolerance and Inhibition Mechanisms on β-Glucosidases

scientific article published on 04 September 2019

PDBest: a user-friendly platform for manipulating and enhancing protein structures

scientific article published on 24 April 2015

Propedia: a database for protein-peptide identification based on a hybrid clustering algorithm

scientific article published on 02 January 2021

Proteus: An algorithm for proposing stabilizing mutation pairs based on interactions observed in known protein 3D structures

scientific article published on 01 July 2020

Revealing the hidden functional diversity of an enzyme family

scientific article

Using linear algebra for protein structural comparison and classification

scientific article published on July 2009

VERMONT: Visualizing mutations and their effects on protein physicochemical and topological property conservation.

scientific article

Vermont: a multi-perspective visual interactive platform for mutational analysis

scientific article published on 13 September 2017

aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction.

scientific article published on 8 February 2013

nAPOLI: a graph-based strategy to detect and visualize conserved protein-ligand interactions in large-scale

scientific article published on 10 January 2019

visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level

scientific article published on 11 March 2020

List of works by Raquel Cardoso de Melo Minardi

3-Keto-5-aminohexanoate Cleavage Enzyme: A COMMON FOLD FOR AN UNCOMMON CLAISEN-TYPE CONDENSATION

A Computational Method to Propose Mutations in Enzymes Based on Structural Signature Variation (SSV)

Conformational flexibility correlates with glucose tolerance for point mutations in β-glucosidases - a computational study

Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns

E-Volve: understanding the impact of mutations in SARS-CoV-2 variants spike protein on antibodies and ACE2 affinity through patterns of chemical interactions at protein interfaces

ENZYMAP: exploiting protein annotation for modeling and predicting EC number changes in UniProt/Swiss-Prot

GASS: identifying enzyme active sites with genetic algorithms.

GRaSP: a graph-based residue neighborhood strategy to predict binding sites

Glutantβase: a database for improving the rational design of glucose-tolerant β-glucosidases

Identification of subfamily-specific sites based on active sites modeling and clustering ⬇️

Introducing Programming Skills for Life Science Students

Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering

Molecular Dynamics Gives New Insights into the Glucose Tolerance and Inhibition Mechanisms on β-Glucosidases

PDBest: a user-friendly platform for manipulating and enhancing protein structures

Propedia: a database for protein-peptide identification based on a hybrid clustering algorithm

Proteus: An algorithm for proposing stabilizing mutation pairs based on interactions observed in known protein 3D structures

Revealing the hidden functional diversity of an enzyme family

Using linear algebra for protein structural comparison and classification

VERMONT: Visualizing mutations and their effects on protein physicochemical and topological property conservation.

Vermont: a multi-perspective visual interactive platform for mutational analysis

aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction.

nAPOLI: a graph-based strategy to detect and visualize conserved protein-ligand interactions in large-scale

visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level