List of works - Andrey Sivachenko

A landscape of driver mutations in melanoma

scientific article

A pan-cancer analysis of transcriptome changes associated with somatic mutations in U2AF1 reveals commonly altered splicing events

scientific article published on 31 January 2014

Comparative analysis of RNA sequencing methods for degraded or low-input samples

scientific article

Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma

scientific article

Evolution and impact of subclonal mutations in chronic lymphocytic leukemia

scientific article published on February 2013

Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity

scientific article published on 24 March 2013

Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer

scientific article

Genome-scale DNA methylation maps of pluripotent and differentiated cells

scientific article

Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion

scientific article published on 04 September 2011

Inhibitor-sensitive FGFR2 and FGFR3 mutations in lung squamous cell carcinoma

scientific article published on 20 June 2013

Initial genome sequencing and analysis of multiple myeloma

scientific article

Integrative analysis of the melanoma transcriptome

scientific article

Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing

scientific article

Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA.

scientific article

Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations

scientific article (publication date: 22 July 2012)

Mutational heterogeneity in cancer and the search for new cancer-associated genes

scientific article

PRADA: pipeline for RNA sequencing data analysis

scientific article

Punctuated evolution of prostate cancer genomes

scientific article published on April 2013

RNA-SeQC: RNA-seq metrics for quality control and process optimization

scientific article

RNA-Seq methods for imperfect samples: development, evaluation and applications

scientific article published on 19 September 2011

SF3B1 and other novel cancer genes in chronic lymphocytic leukemia

scientific article

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

scientific article

Somatic mutation of CDKN1B in small intestine neuroendocrine tumors

scientific article published on 3 November 2013

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

scientific article (publication date: September 2010)

The genetic landscape of high-risk neuroblastoma

scientific article published on 20 January 2013

The genomic landscape of pediatric Ewing sarcoma

scientific article

Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine

scientific article

List of works by Andrey Sivachenko

A landscape of driver mutations in melanoma

A pan-cancer analysis of transcriptome changes associated with somatic mutations in U2AF1 reveals commonly altered splicing events

Comparative analysis of RNA sequencing methods for degraded or low-input samples

Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma

Evolution and impact of subclonal mutations in chronic lymphocytic leukemia

Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity

Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer

Genome-scale DNA methylation maps of pluripotent and differentiated cells

Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion

Inhibitor-sensitive FGFR2 and FGFR3 mutations in lung squamous cell carcinoma

Initial genome sequencing and analysis of multiple myeloma

Integrative analysis of the melanoma transcriptome

Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing

Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA.

Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations

Mutational heterogeneity in cancer and the search for new cancer-associated genes

PRADA: pipeline for RNA sequencing data analysis

Punctuated evolution of prostate cancer genomes

RNA-SeQC: RNA-seq metrics for quality control and process optimization

RNA-Seq methods for imperfect samples: development, evaluation and applications

SF3B1 and other novel cancer genes in chronic lymphocytic leukemia

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

Somatic mutation of CDKN1B in small intestine neuroendocrine tumors

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

The genetic landscape of high-risk neuroblastoma

The genomic landscape of pediatric Ewing sarcoma

Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine