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List of works by Isabella Abbate

'Sentinel' mutations in standard population sequencing can predict the presence of HIV-1 reverse transcriptase major mutations detectable only by ultra-deep pyrosequencing.

scientific article published on 2 September 2011

A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing

scientific article

A cluster of hepatitis C virus infections associated with ozone-enriched transfusion of autologous blood in Rome, Italy

scientific article published in September 2005

Activation of Vgamma9Vdelta2 T cells by non-peptidic antigens induces the inhibition of subgenomic HCV replication

scientific article published on 16 December 2005

Acute HIV infection (AHI) in a specialized clinical setting: case-finding, description of virological, epidemiological and clinical characteristics

scientific article

An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing

scientific article published on 13 April 2014

Archived HIV-1 minority variants detected by ultra-deep pyrosequencing in provirus may be fully replication competent

scientific article published in November 2009

Assembly and characterization of pandemic influenza A H1N1 genome in nasopharyngeal swabs using high-throughput pyrosequencing.

scientific article

Cell membrane proteins and quasispecies compartmentalization of CSF and plasma HIV-1 from aids patients with neurological disorders

article

Chronic HIV-infected patients show an impaired dendritic cells differentiation of bone marrow CD34⁺ cells

scientific article published on December 2013

Co-receptor usage prediction at quasispecies level using ultra-deep pyrosequencing on both circulating and proviral hiv in patients candidates to CCR5 antagonist treatment.

scientific article published on 11 May 2010

Collaborative national multicenter for the identification of conversion factors from copies/mL to international units/mL for the normalization of HCMV DNA load

scientific article published on 25 May 2019

Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing

scientific article

Comment on Neumann et al. 'Differential antiviral effect of PEG-interferon-alpha-2b on HIV and HCV in the treatment of HIV/HCV co-infected patients'.

scientific article published in January 2008

Coordinate induction of IFN-alpha and -gamma by SARS-CoV also in the absence of virus replication.

scientific article

Correction: The dual-target approach in viral HIV-1 viremia testing: An added value to virological monitoring?

scientific article published on 27 February 2020

Deep sequencing of plasma and proviral HIV-1 to establish coreceptor usage: what is the clinical impact of the quasispecies distribution?

scientific article published in September 2011

Detection of HIV-1 matrix protein p17 quasispecies variants in plasma of chronic HIV-1-infected patients by ultra-deep pyrosequencing

scientific article published on July 2014

Detection of quasispecies variants predicted to use CXCR4 by ultra-deep pyrosequencing during early HIV infection

article

Early ART in primary HIV infection may also preserve lymphopoiesis capability in circulating haematopoietic progenitor cells: a case report.

scientific article published on 20 January 2015

Effect of raltegravir on the total and unintegrated proviral HIV DNA during raltegravir-based HAART

article

Endogenous levels of mRNA for IFNs and IFN-related genes in hepatic biopsies of chronic HCV-infected and non-alcoholic steatohepatitis patients

scientific article published in August 2003

Evolution of HIV-1 tropism at quasispecies level after 5 years of combination antiretroviral therapy in patients always suppressed or experiencing episodes of virological failure

scientific article published on 10 July 2014

Evolution of HVR-1 quasispecies after 1-year treatment in HIV/HCV-coinfected patients according to the pattern of response to highly active antiretroviral therapy

scientific article published in January 2006

Extent of HCV NS3 protease variability and resistance-associated mutations assessed by next generation sequencing in HCV monoinfected and HIV/HCV coinfected patients

scientific article published on 13 August 2013

Fatal myocardial co-infection by Toxoplasma gondii and Parvovirus B19 in an HIV patient

article

GB virus type C-driven protection in HIV/HCV coinfection: possible role of interferon gamma and dendritic cell activation

scientific article published on May 2008

GB-virus type C effect on HIV infection, interferon system, and dendritric cells.

scientific article published in April 2008

Granulocytic Myeloid-Derived Suppressor Cells Increased in Early Phases of Primary HIV Infection Depending on TRAIL Plasma Level

scientific article published on 2 January 2017

HVR-1 quasispecies modifications occur early and are correlated to initial but not sustained response in HCV-infected patients treated with pegylated- or standard-interferon and ribavirin

scientific article published on May 2004

ISDR pattern and evolution in patients with chronic hepatitis C treated with standard or PEG-IFN plus ribavirin.

scientific article published in April 2003

Importance of V3 Loop Flexibility and Net Charge in the Context of Co-Receptor Recognition. A Molecular Dynamics Study on HIV gp120

scientific article published on 01 January 2012

In-depth analysis of compartmentalization of HIV-1 matrix protein p17 in PBMC and plasma

scientific article published on 9 January 2017

Interferon May Prevent HIV Viral Rebound After HAART Interruption in HIV Patients

article

Intra-hepatic messenger RNA levels for interferons and related genes in hepatitis C virus/HIV co-infected patients

scientific article published in March 2004

Iron overload down-regulates the expression of the HIV-1 Rev cofactor eIF5A in infected T lymphocytes

scientific article published on 04 August 2017

Low‐Abundance Drug Resistance Mutations: Extending the HIV Paradigm to Hepatitis B Virus

article

MYO1E mutations and childhood familial focal segmental glomerulosclerosis

scientific article

Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations

scientific article published on 12 February 2009

Molecular epidemiology of a hepatitis C virus epidemic in a haemodialysis unit: outbreak investigation and infection outcome

scientific article

Molecular epidemiology of a hepatitis C virus outbreak in a hemodialysis unit in Italy

scientific article published in February 2008

Monophyletic HIV type 1 CRF02-AG in a nosocomial outbreak in Benghazi, Libya

scientific article published on July 2002

Multicenter comparative study of Epstein-Barr virus DNA quantification for virological monitoring in transplanted patients

scientific article published on 24 December 2010

Myeloid Derived Suppressor Cells Expansion Persists After Early ART and May Affect CD4 T Cell Recovery

Nation-wide measure of variability in HCMV, EBV and BKV DNA quantification among centers involved in monitoring transplanted patients.

scientific article published on 2 July 2016

Near full length hepatitis C virus genome reconstruction by next generation sequencing based on genotype-independent amplification

scientific article published on 23 March 2015

Non-Hodgkin lymphomas concurrent with HHV8-associated Kaposi's sarcoma in the same lymph node in AIDS and non-AIDS patients

scientific article

Peripheral blood HIV-1 DNA dynamics in antiretroviral-treated HIV/HCV co-infected patients receiving directly-acting antivirals

scientific article published on 27 October 2017

Possible compartmentalization of hepatitis C viral replication in the genital tract of HIV-1-coinfected women

scientific article published on 19 October 2006

Primary effusion lymphoma in pleural and pericardial cavities with multiple solid nodal and extra-nodal involvement in a human immunodeficiency virus-positive patient

scientific article published in January 2007

Quantitative HIV-1 proviral DNA detection: a multicentre analysis

scientific article published on October 2010

RANTES Stimulates Cell-Mediated Transmission of HIV-1 Infection

article

Reply to Bull et al

scientific article published in 2007

Slow or fast viral load decay as a predictor of residual viremia level in HIV-infected patients undergoing successful first-line cART.

scientific article

Slow response to entecavir treatment in treatment-naive HBV patients is conditioned by immune response rather than by the presence or selection of refractory variants

scientific article published on 25 November 2013

The association between non-Hodgkin lymphoma and renal cell carcinoma in an HIV-positive patient: clinico-pathological features and pathogenic implications

scientific article published on 01 September 2008

The basal activation state of DC subsets correlates with anti-HCV treatment outcome in HCV/HIV co-infected patients

scientific article published on 3 December 2010

The dual-target approach in viral HIV-1 viremia testing: An added value to virological monitoring?

scientific article published on 05 February 2020

The genotypic false positive rate determined by V3 population sequencing can predict the burden of HIV-1 CXCR4-using species detected by pyrosequencing

scientific article

Ultra-deep sequencing reveals hidden HIV-1 minority lineages and shifts of viral population between the main cellular reservoirs of the infection after therapy interruption

scientific article published in June 2012

Underevaluation of HIV-1 plasma viral load by a commercially available assay in a cluster of patients infected with HIV-1 A/G circulating recombinant form (CRF02).

scientific article published on December 2002

Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV Type 1 BF recombinant associated with a fatal primary infection

scientific article published in September 2009

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