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List of works by Alexander Vologodskii

Bending of short DNA helices ⬇️

scientific article published on January 1, 2013

Brownian dynamics simulation of knot diffusion along a stretched DNA molecule

scientific article

Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases

scientific article

Computational analysis of DNA gyrase action

scientific article

Computational analysis of the chiral action of type II DNA topoisomerases

scientific article published on 01 July 2002

Contribution of the intrinsic curvature to measured DNA persistence length

scientific article published on 01 March 2002

Cyclization of short DNA fragments and bending fluctuations of the double helix

scientific article

DNA melting and energetics of the double helix

scientific article published on 14 November 2017

DNA supercoiling helps to unlink sister duplexes after replication

scientific article

DNA-ligand binding and the force-extension experiments. Comment on "Biophysical characterization of DNA binding from single molecule force measurements" by Chaurasiya et al

scientific article published on 01 September 2010

Determining protein-induced DNA bending in force-extension experiments: theoretical analysis

scientific article published on May 2009

Disentangling DNA molecules

scientific article

Gapped DNA and cyclization of short DNA fragments.

scientific article

Kinking the double helix by bending deformation

scientific article published on 20 December 2007

Probability of the site juxtaposition determines the rate of protein-mediated DNA looping

scientific article

Protein-induced local DNA bends regulate global topology of recombination products

scientific article

Sequence dependence of DNA bending rigidity

scientific article

Simulation of DNA catenanes

scientific article

Strong bending of the DNA double helix ⬇️

scientific article published on May 15, 2013

Symmetric DNA sites are functionally asymmetric within Flp and Cre site-specific DNA recombination synapses

scientific article published in July 2002

Temperature dependence of DNA persistence length

scientific article

Theoretical analysis of disruptions in DNA minicircles

scientific article published on February 2009

Theoretical model, its parameters and predictions: Reply to comments on "DNA melting and energetics of the double helix"

scientific article published on 02 May 2018

Theoretical models of DNA topology simplification by type IIA DNA topoisomerases

scientific article published on 21 April 2009

Tightness of knots in a polymer chain

scientific article

Type II topoisomerases: Experimental studies, theoretical models, and logic: Reply to comments on "Disentangling DNA molecules".

scientific article published on 21 September 2016

Unlinking of Supercoiled DNA Catenanes by Type IIA Topoisomerases ⬇️

scientific article published on September 20, 2011

When Computer Simulation Excels Experiment

scientific article published on May 2016

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