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List of works by Stephen Nayfach

A Metagenomic Meta-analysis Reveals Functional Signatures of Health and Disease in the Human Gut Microbiome

article

A genomic catalog of Earth's microbiomes

scientific article published on 09 November 2020

A most wanted list of conserved microbial protein families with no known domains

scientific article published in PLoS ONE

A unified catalog of 204,938 reference genomes from the human gut microbiome

scientific article published on 20 July 2020

An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

scientific article published on 18 October 2016

Author Correction: A genomic catalog of Earth's microbiomes

correction of a scholarly article

Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

scientific article published on 01 March 2020

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes

scientific article published on 13 November 2015

Automated and accurate estimation of gene family abundance from shotgun metagenomes

article

Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome

scientific article

CheckV assesses the quality and completeness of metagenome-assembled viral genomes

scientific article published on 21 December 2020

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

scientific article published on 22 July 2019

Discovery of Reactive Microbiota-Derived Metabolites that Inhibit Host Proteases

scientific article

Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution

scientific article published in May 2022

Diversity, evolution, and classification of virophages uncovered through global metagenomics

scientific article published on 10 December 2019

Ecology and molecular targets of hypermutation in the global microbiome

scientific article published on 24 May 2021

Genetic basis for the cooperative bioactivation of plant lignans by Eggerthella lenta and other human gut bacteria

scientific article published on 04 November 2019

Global ecotypes in the ubiquitous marine clade SAR86

scientific article published on 14 October 2019

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses

scientific article published on 02 November 2020

Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community

scientific article published on 09 August 2020

MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome.

scientific article published on 22 June 2015

Modulation of a Circulating Uremic Solute via Rational Genetic Manipulation of the Gut Microbiota.

scientific article published on 24 November 2016

New insights from uncultivated genomes of the global human gut microbiome

scientific article published on 13 March 2019

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

article

Publisher Correction: A genomic catalog of Earth's microbiomes

scientific article published on 18 November 2020

Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis

scientific article published on 17 September 2018

Toward Accurate and Quantitative Comparative Metagenomics

scientific article

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