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List of works by F Xia

A Comprehensive Investigation of Active Learning Strategies for Conducting Anti-Cancer Drug Screening

scholarly article

AI Meets Exascale Computing: Advancing Cancer Research With Large-Scale High Performance Computing

scientific article published on 02 October 2019

Antimicrobial Resistance Prediction in PATRIC and RAST.

scientific article published on 14 June 2016

Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center

scientific article

Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model.

scientific article published on 29 October 2012

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research

scholarly article by Justin M Wozniak et al published 21 December 2018 in BMC Bioinformatics

Connecting genotype to phenotype in the era of high-throughput sequencing.

scientific article published on 21 March 2011

Deep medical image analysis with representation learning and neuromorphic computing

scientific article published on 11 December 2020

Detecting operons in bacterial genomes via visual representation learning

scientific article published on 22 January 2021

Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae

scientific article published on 11 January 2018

Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models

scientific article published on 11 September 2020

Ensemble transfer learning for the prediction of anti-cancer drug response

scientific article published on 22 October 2020

Identifying genomic islands with deep neural networks

scientific article published on 02 June 2021

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

scientific article

KBase: The United States Department of Energy Systems Biology Knowledgebase

article

Modeling central metabolism and energy biosynthesis across microbial life

scientific article

PATRIC as a unique resource for studying antimicrobial resistance.

scientific article published on 31 July 2017

Pandemic drugs at pandemic speed: infrastructure for accelerating COVID-19 drug discovery with hybrid machine learning- and physics-based simulations on high-performance computers

scientific article published in 2021

Performance, Energy, and Scalability Analysis and Improvement of Parallel Cancer Deep Learning CANDLE Benchmarks

scientific article published on 25 July 2019

Predicting tumor cell line response to drug pairs with deep learning

scientific article published on 21 December 2018

RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

scientific article

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models

scientific article

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation

scientific article published on December 2006

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

scientific article published on 01 January 2020

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

scientific article

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